NP-MRD: Showing NP-Card for panepocyclinol F (NP0331602)

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Record Information

Version

2.0

Created at

2023-04-24 20:05:10 UTC

Updated at

2024-09-03 04:16:14 UTC

NP-MRD ID

NP0331602

Natural Product DOI

https://doi.org/10.57994/0582

Secondary Accession Numbers

None

Natural Product Identification

Common Name

panepocyclinol F

Description

Panepocyclinol F belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. panepocyclinol F was first documented in 2023 (PMID: 37249258). Based on a literature review very few articles have been published on panepocyclinol F.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652304242322052D          

 36 40  0  0  1  0            999 V2000
    0.4083    0.4714    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9186   -0.1768    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7351   -0.0589    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0413    0.7071    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3167    1.5107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5868    1.8953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6229    2.2767    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5517    0.0589    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3682    0.1768    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9555    0.6016    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1106    1.2862    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8281    0.0030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5682    0.3675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2539   -0.0913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6227    1.1907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0620   -0.5893    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2662   -2.0036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3889   -1.1196    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2054   -1.0018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6951   -0.3536    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1848    0.2946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4910    1.0607    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7558   -1.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2455   -0.7071    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -0.8250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9393   -1.4732    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4496   -2.1214    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1227   -1.5911    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8165   -2.3571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6124   -0.9429    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2041   -1.0607    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5103   -1.8268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3269   -1.9446    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  5  9  1  1  0  0  0
  5 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  6 12  1  0  0  0  0
 11 13  1  1  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 10 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 18 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 22 21  1  1  0  0  0
 22 23  1  0  0  0  0
 10 23  1  1  0  0  0
 23 24  2  0  0  0  0
 17 25  1  6  0  0  0
 17 26  1  0  0  0  0
  3 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 28 29  1  1  0  0  0
 28 30  1  0  0  0  0
 30 31  1  6  0  0  0
 30 32  1  0  0  0  0
  2 32  1  0  0  0  0
 32 33  1  1  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 34 36  2  0  0  0  0
M  END


  Mrv1652304242322052D          

 36 40  0  0  1  0            999 V2000
    0.4083    0.4714    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9186   -0.1768    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7351   -0.0589    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0413    0.7071    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3167    1.5107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5868    1.8953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6229    2.2767    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5517    0.0589    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3682    0.1768    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9555    0.6016    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1106    1.2862    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8281    0.0030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5682    0.3675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2539   -0.0913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6227    1.1907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0620   -0.5893    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2662   -2.0036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3889   -1.1196    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2054   -1.0018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6951   -0.3536    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1848    0.2946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4910    1.0607    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7558   -1.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2455   -0.7071    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -0.8250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9393   -1.4732    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4496   -2.1214    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1227   -1.5911    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8165   -2.3571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6124   -0.9429    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2041   -1.0607    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5103   -1.8268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3269   -1.9446    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  5  9  1  1  0  0  0
  5 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  6 12  1  0  0  0  0
 11 13  1  1  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 10 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 18 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 22 21  1  1  0  0  0
 22 23  1  0  0  0  0
 10 23  1  1  0  0  0
 23 24  2  0  0  0  0
 17 25  1  6  0  0  0
 17 26  1  0  0  0  0
  3 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 28 29  1  1  0  0  0
 28 30  1  0  0  0  0
 30 31  1  6  0  0  0
 30 32  1  0  0  0  0
  2 32  1  0  0  0  0
 32 33  1  1  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 34 36  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0331602

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]12C=C3C(=O)[C@H](OC(C)=O)[C@@H](O)[C@H](O)[C@@]3([H])[C@]3([H])[C@@H](O)[C@@H]4O[C@@H]4C(=O)[C@]13[C@@H](OC2(C)C)C=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C24H30O9/c1-8(2)6-12-24-11(23(4,5)33-12)7-10-13(14(24)17(28)20-21(32-20)22(24)30)16(27)18(29)19(15(10)26)31-9(3)25/h6-7,11-14,16-21,27-29H,1-5H3/t11-,12+,13-,14-,16-,17-,18+,19+,20+,21+,24+/m1/s1

> <INCHI_KEY>
WQKKDLGTEHSXHK-DROUQYBKSA-N

> <FORMULA>
C24H30O9

> <MOLECULAR_WEIGHT>
462.495

> <EXACT_MASS>
462.188982546

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
63

> <JCHEM_AVERAGE_POLARIZABILITY>
46.610534556791045

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2S,5S,9R,10S,11R,12S,13S,14R,15S,17S)-10,11,14-trihydroxy-4,4-dimethyl-2-(2-methylprop-1-en-1-yl)-8,18-dioxo-3,16-dioxapentacyclo[11.5.0.0^{1,5}.0^{7,12}.0^{15,17}]octadec-6-en-9-yl acetate

> <JCHEM_LOGP>
-0.12940620266666586

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.520072423411335

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.90514849541454

> <JCHEM_PKA_STRONGEST_BASIC>
-3.3291547404122337

> <JCHEM_POLAR_SURFACE_AREA>
142.89000000000001

> <JCHEM_REFRACTIVITY>
113.73960000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,5S,9R,10S,11R,12S,13S,14R,15S,17S)-10,11,14-trihydroxy-4,4-dimethyl-2-(2-methylprop-1-en-1-yl)-8,18-dioxo-3,16-dioxapentacyclo[11.5.0.0^{1,5}.0^{7,12}.0^{15,17}]octadec-6-en-9-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-23         0                                  
HETATM    1  O   UNK     0       0.762   0.880   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       1.715  -0.330   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.239  -0.110   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.811   1.320   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.191   2.820   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.829   3.538   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.763   4.250   0.000  0.00  0.00           C+0
HETATM    9  H   UNK     0       4.763   0.110   0.000  0.00  0.00           H+0
HETATM   10  C   UNK     0       6.287   0.330   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.384   1.123   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       7.673   2.401   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       9.012   0.006   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.394   0.686   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.674  -0.170   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.496   2.223   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.716  -1.100   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       6.097  -3.740   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       8.193  -2.090   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       9.717  -1.870   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       8.764  -0.660   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       7.812   0.550   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       8.383   1.980   0.000  0.00  0.00           O+0
HETATM   25  H   UNK     0       5.144  -2.530   0.000  0.00  0.00           H+0
HETATM   26  C   UNK     0       4.192  -1.320   0.000  0.00  0.00           C+0
HETATM   27  H   UNK     0       2.667  -1.540   0.000  0.00  0.00           H+0
HETATM   28  C   UNK     0       3.620  -2.750   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       4.573  -3.960   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       2.096  -2.970   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       1.524  -4.400   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       1.143  -1.760   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -0.381  -1.980   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      -0.953  -3.410   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      -2.477  -3.630   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   32                                                  
CONECT    3    2    4   26                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    9   10                                             
CONECT    6    5    7    8   12                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    5                                                            
CONECT   10    5   11   17   23                                             
CONECT   11   10   12   13                                                  
CONECT   12   11    6                                                       
CONECT   13   11   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17   10   18   25   26                                             
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   22                                                  
CONECT   21   20   22                                                       
CONECT   22   20   21   23                                                  
CONECT   23   22   10   24                                                  
CONECT   24   23                                                            
CONECT   25   17                                                            
CONECT   26   17    3   27   28                                             
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30    2   33                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   80    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₄H₃₀O₉

Average Mass

462.4950 Da

Monoisotopic Mass

462.18898 Da

IUPAC Name

(1S,2S,5S,9R,10S,11R,12S,13S,14R,15S,17S)-10,11,14-trihydroxy-4,4-dimethyl-2-(2-methylprop-1-en-1-yl)-8,18-dioxo-3,16-dioxapentacyclo[11.5.0.0^{1,5}.0^{7,12}.0^{15,17}]octadec-6-en-9-yl acetate

Traditional Name

(1S,2S,5S,9R,10S,11R,12S,13S,14R,15S,17S)-10,11,14-trihydroxy-4,4-dimethyl-2-(2-methylprop-1-en-1-yl)-8,18-dioxo-3,16-dioxapentacyclo[11.5.0.0^{1,5}.0^{7,12}.0^{15,17}]octadec-6-en-9-yl acetate

CAS Registry Number

Not Available

SMILES

[H][C@]12C=C3C(=O)[C@H](OC(C)=O)[C@@H](O)[C@H](O)[C@@]3([H])[C@]3([H])[C@@H](O)[C@@H]4O[C@@H]4C(=O)[C@]13[C@@H](OC2(C)C)C=C(C)C

InChI Identifier

InChI=1S/C24H30O9/c1-8(2)6-12-24-11(23(4,5)33-12)7-10-13(14(24)17(28)20-21(32-20)22(24)30)16(27)18(29)19(15(10)26)31-9(3)25/h6-7,11-14,16-21,27-29H,1-5H3/t11-,12+,13-,14-,16-,17-,18+,19+,20+,21+,24+/m1/s1

InChI Key

WQKKDLGTEHSXHK-DROUQYBKSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2024-05-11	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2024-05-11	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2024-05-11	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2024-05-11	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2024-05-11	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2024-05-11	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2024-05-11	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2024-05-11	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2023-04-24	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2023-04-24	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2023-04-24	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2023-04-24	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2023-04-24	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2023-04-24	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2023-04-24	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, C3D6O, experimental)	yuezhouw1120@163.com	Not Available	Not Available	2023-04-24	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Panus rudis		Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Naphthofuran
Fatty alcohol ester
Alpha-acyloxy ketone
B'-hydroxy-alpha,beta-unsaturated-ketone
Oxepane
Alpha-branched alpha,beta-unsaturated-ketone
Monosaccharide
Beta-hydroxy ketone
Cyclitol or derivatives
Alpha,beta-unsaturated ketone
Tetrahydrofuran
Enone
Cyclic alcohol
Acryloyl-group
Secondary alcohol
Ketone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Ether
Oxirane
Dialkyl ether
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.13	ChemAxon
pKa (Strongest Acidic)	11.91	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	142.89 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	113.74 m³·mol⁻¹	ChemAxon
Polarizability	46.61 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Li L, Wang Y, Chen N, Li X, Li H, Jin L, Ou Y, Kong XJ, Cao S, Xu Q, Wu X, Han J, Deng X: Exploring Diversity through Dimerization in Natural Products by a Rational Tandem Mass-Based Molecular Network Strategy. Org Lett. 2023 Jun 9;25(22):4016-4021. doi: 10.1021/acs.orglett.3c01038. Epub 2023 May 30. [PubMed:37249258 ]
DOI: 10.1021/acs.orglett.3c01038

Showing NP-Card for panepocyclinol F (NP0331602)

MOL for NP0331602 (panepocyclinol F)

3D MOL for NP0331602 (panepocyclinol F)

3D SDF for NP0331602 (panepocyclinol F)

3D-SDF for NP0331602 (panepocyclinol F)

PDB for NP0331602 (panepocyclinol F)

3D PDB for NP0331602 (panepocyclinol F)

SMILES for NP0331602 (panepocyclinol F)

INCHI for NP0331602 (panepocyclinol F)

Structure for NP0331602 (panepocyclinol F)

3D Structure for NP0331602 (panepocyclinol F)