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Showing NP-Card for Kitaniitetronin F (NP0331546)

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Record Information
Version2.0
Created at2023-03-17 17:41:56 UTC
Updated at2024-09-03 04:16:05 UTC
NP-MRD IDNP0331546
Natural Product DOIhttps://doi.org/10.57994/0522
Secondary Accession NumbersNone
Natural Product Identification
Common NameKitaniitetronin F
DescriptionKitaniitetronin F belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid. Based on a literature review very few articles have been published on Kitaniitetronin F.
Structure
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MOLSDFPDBSMILESInChI

MOL for NP0331546 (Kitaniitetronin F)


  Mrv1652303172318412D          

 13 13  0  0  1  0            999 V2000
    0.1529   -0.0156    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3244    0.7914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2276    1.4045    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0481    1.3183    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1849    2.1190    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0781    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7926    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5070    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2215    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9360    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6505    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9919    1.9475    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6050    2.4995    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  3  5  1  0  0  0  0
  2  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  3  0  0  0  0
  6 12  1  0  0  0  0
  5 12  1  0  0  0  0
 12 13  2  0  0  0  0
M  END
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3D MOL for NP0331546 (Kitaniitetronin F)

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3D SDF for NP0331546 (Kitaniitetronin F)

  Mrv1652303172318412D          

 13 13  0  0  1  0            999 V2000
    0.1529   -0.0156    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3244    0.7914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2276    1.4045    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0481    1.3183    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1849    2.1190    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0781    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7926    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5070    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2215    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9360    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6505    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9919    1.9475    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6050    2.4995    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  3  5  1  0  0  0  0
  2  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  3  0  0  0  0
  6 12  1  0  0  0  0
  5 12  1  0  0  0  0
 12 13  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0331546

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1OC(=O)C(CCCC#C)=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C10H12O3/c1-3-4-5-6-8-9(11)7(2)13-10(8)12/h1,7,11H,4-6H2,2H3/t7-/m1/s1

> <INCHI_KEY>
LKHULCOJZHLVDJ-SSDOTTSWSA-N

> <FORMULA>
C10H12O3

> <MOLECULAR_WEIGHT>
180.203

> <EXACT_MASS>
180.078644246

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
25

> <JCHEM_AVERAGE_POLARIZABILITY>
18.89564000108446

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5R)-4-hydroxy-5-methyl-3-(pent-4-yn-1-yl)-2,5-dihydrofuran-2-one

> <JCHEM_LOGP>
1.6490141000000005

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.881345202711795

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.630985586018373

> <JCHEM_PKA_STRONGEST_BASIC>
-6.896806871717165

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
48.781200000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(5R)-4-hydroxy-5-methyl-3-(pent-4-yn-1-yl)-5H-furan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for NP0331546 (Kitaniitetronin F)
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PDB for NP0331546 (Kitaniitetronin F)
HEADER    PROTEIN                                 17-MAR-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-MAR-23         0                                  
HETATM    1  O   UNK     0       0.285  -0.029   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       0.606   1.477   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.425   2.622   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.956   2.461   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       0.345   3.955   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       2.012   2.104   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.346   1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.680   2.104   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.013   1.334   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.347   2.104   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.681   2.874   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.851   3.635   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.996   4.666   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3   12                                                       
CONECT    6    2    7   12                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10                                                            
CONECT   12    6    5   13                                                  
CONECT   13   12                                                            
MASTER        0    0    0    0    0    0    0    0   13    0   26    0
END

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3D PDB for NP0331546 (Kitaniitetronin F)
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SMILES for NP0331546 (Kitaniitetronin F)
C[C@H]1OC(=O)C(CCCC#C)=C1O
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INCHI for NP0331546 (Kitaniitetronin F)
InChI=1S/C10H12O3/c1-3-4-5-6-8-9(11)7(2)13-10(8)12/h1,7,11H,4-6H2,2H3/t7-/m1/s1
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View in JSmol
SynonymsNot Available
Chemical FormulaC10H12O3
Average Mass180.2030 Da
Monoisotopic Mass180.07864 Da
IUPAC Name(5R)-4-hydroxy-5-methyl-3-(pent-4-yn-1-yl)-2,5-dihydrofuran-2-one
Traditional Name(5R)-4-hydroxy-5-methyl-3-(pent-4-yn-1-yl)-5H-furan-2-one
CAS Registry NumberNot Available
SMILES
C[C@H]1OC(=O)C(CCCC#C)=C1O
InChI Identifier
InChI=1S/C10H12O3/c1-3-4-5-6-8-9(11)7(2)13-10(8)12/h1,7,11H,4-6H2,2H3/t7-/m1/s1
InChI KeyLKHULCOJZHLVDJ-SSDOTTSWSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
HSQC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)littlesweet@sjtu.edu.cnNot AvailableNot Available2023-03-17View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)littlesweet@sjtu.edu.cnNot AvailableNot Available2023-03-17View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CDCl3, experimental)littlesweet@sjtu.edu.cnNot AvailableNot Available2023-03-17View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, CDCl3, experimental)littlesweet@sjtu.edu.cnNot AvailableNot Available2023-03-17View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid.
KingdomOrganic compounds  
Super ClassLipids and lipid-like molecules  
ClassFatty Acyls  
Sub ClassFatty acid esters  
Direct ParentFatty acid esters  
Alternative Parents
Substituents
  • Fatty acid ester
    • 

  • Monosaccharide
    • 

  • 2-furanone
    • 

  • Vinylogous acid
    • 

  • Alpha,beta-unsaturated carboxylic ester
    • 

  • Enoate ester
    • 

  • Dihydrofuran
    • 

  • Lactone
    • 

  • Carboxylic acid ester
    • 

  • Haloacetylene or derivatives
    • 

  • Acetylide
    • 

  • Oxacycle
    • 

  • Organoheterocyclic compound
    • 

  • Monocarboxylic acid or derivatives
    • 

  • Carboxylic acid derivative
    • 

  • Organic oxygen compound
    • 

  • Organic oxide
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.65ChemAxon
pKa (Strongest Acidic)5.63ChemAxon
pKa (Strongest Basic)-6.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area46.53 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity48.78 m³·mol⁻¹ChemAxon
Polarizability18.9 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. DOI: 10.1021/acs.orglett.3c00103