NP-MRD: Showing NP-Card for Glenthmycin D (NP0331391)

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Record Information

Version

2.0

Created at

2022-12-23 12:05:25 UTC

Updated at

2024-09-03 04:15:38 UTC

NP-MRD ID

NP0331391

Natural Product DOI

https://doi.org/10.57994/0340

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Glenthmycin D

Description

Glenthmycin D was first documented in 2022 (PMID: 35640100).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652312232213052D          

 66 72  0  0  1  0            999 V2000
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M  END


  Mrv1652312232213052D          

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M  END
> <DATABASE_ID>
NP0331391

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]12C=C(C)[C@@]3([H])C(C)=CCC\C(C)=C/[C@]4(C)C=C([C@H](C)C[C@]44OC(=O)C(=C4O)C(=O)[C@@]3(C)[C@]1([H])[C@@H](C)CC[C@@H]2O[C@@H]1O[C@H](C)[C@@H](OC(=O)C2=C(O)C=C(OC)C=C2C)[C@@H](O)[C@H]1O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C49H62O14/c1-22-12-11-13-23(2)36-26(5)17-30-33(61-46-39(52)38(51)40(28(7)60-46)62-44(57)34-25(4)16-29(59-10)18-32(34)50)15-14-24(3)37(30)48(36,9)41(53)35-42(54)49(63-45(35)58)20-27(6)31(43(55)56)21-47(49,8)19-22/h13,16-19,21,24,27-28,30,33,36-40,46,50-52,54H,11-12,14-15,20H2,1-10H3,(H,55,56)/b22-19-,23-13-/t24-,27+,28+,30+,33-,36+,37+,38-,39+,40+,46-,47+,48+,49+/m0/s1

> <INCHI_KEY>
FBBPNUSBCOHVCU-FAIIYYQZSA-N

> <FORMULA>
C49H62O14

> <MOLECULAR_WEIGHT>
875.021

> <EXACT_MASS>
874.413956676

$$$$

HEADER    PROTEIN                                 23-DEC-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-DEC-22         0                                  
HETATM    1  O   UNK     0       8.052  -5.268   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       8.541  -3.536   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       7.062  -2.847   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       9.404  -2.085   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.663  -0.942   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       9.010   0.857   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       6.907  -1.219   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.773   0.281   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.204   2.029   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.310   3.330   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.337   4.619   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.744   4.143   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.351   4.251   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.712   3.420   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.022   2.537   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      14.271   3.541   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.221   0.983   0.000  0.00  0.00           C+0
HETATM   18  H   UNK     0      11.758   1.465   0.000  0.00  0.00           H+0
HETATM   19  C   UNK     0      14.716   0.615   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      16.028   1.538   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      15.146  -0.863   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      14.080  -1.975   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      14.510  -3.454   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      16.118  -3.779   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      16.436  -5.300   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      17.898  -5.781   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      19.047  -4.755   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      18.213  -7.289   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      19.676  -7.770   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      17.064  -8.315   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      17.379  -9.822   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      16.231 -10.849   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      16.545 -12.356   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      18.008 -12.838   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      19.156 -11.811   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      18.322 -14.345   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      17.174 -15.371   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      17.488 -16.879   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      16.340 -17.905   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      15.711 -14.890   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      15.397 -13.382   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      13.934 -12.901   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      14.768 -10.367   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      15.602  -7.834   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      14.453  -8.860   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      15.287  -6.326   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0      13.444  -4.565   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      11.949  -4.198   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      11.305  -2.681   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      10.114  -1.607   0.000  0.00  0.00           C+0
HETATM   51  H   UNK     0      13.015  -3.087   0.000  0.00  0.00           H+0
HETATM   52  C   UNK     0      12.585  -1.608   0.000  0.00  0.00           C+0
HETATM   53  H   UNK     0      13.651  -0.496   0.000  0.00  0.00           H+0
HETATM   54  C   UNK     0      12.155  -0.129   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      11.025  -1.300   0.000  0.00  0.00           C+0
HETATM   56  O   UNK     0      12.234  -2.452   0.000  0.00  0.00           O+0
HETATM   57  C   UNK     0      11.782  -1.942   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0       4.111   0.532   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0       5.821  -1.341   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0       7.721  -1.543   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0       7.636  -3.638   0.000  0.00  0.00           C+0
HETATM   62  O   UNK     0       9.073  -4.716   0.000  0.00  0.00           O+0
HETATM   63  O   UNK     0       6.445  -5.004   0.000  0.00  0.00           O+0
HETATM   64  C   UNK     0       8.308   0.138   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      10.026   0.365   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0       6.994   0.707   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2    7                                                       
CONECT    4    2    5   55                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    3    8   66                                             
CONECT    8    7    9   58   59                                             
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   19   54                                             
CONECT   18   17                                                            
CONECT   19   17   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23   51   52                                             
CONECT   23   22   24   47                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   46                                                  
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   44                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33   43                                                  
CONECT   33   32   34   41                                                  
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   37                                                       
CONECT   37   36   38   40                                                  
CONECT   38   37   39                                                       
CONECT   39   38                                                            
CONECT   40   37   41                                                       
CONECT   41   40   33   42                                                  
CONECT   42   41                                                            
CONECT   43   32                                                            
CONECT   44   30   45   46                                                  
CONECT   45   44                                                            
CONECT   46   44   25                                                       
CONECT   47   23   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50   52                                                  
CONECT   50   49                                                            
CONECT   51   22                                                            
CONECT   52   22   49   53   54                                             
CONECT   53   52                                                            
CONECT   54   52   17   55   57                                             
CONECT   55   54    4   56                                                  
CONECT   56   55                                                            
CONECT   57   54                                                            
CONECT   58    8                                                            
CONECT   59    8   60                                                       
CONECT   60   59   61   64                                                  
CONECT   61   60   62   63                                                  
CONECT   62   61                                                            
CONECT   63   61                                                            
CONECT   64   60   65   66                                                  
CONECT   65   64                                                            
CONECT   66   64    7                                                       
MASTER        0    0    0    0    0    0    0    0   66    0  144    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₄₉H₆₂O₁₄

Average Mass

875.0210 Da

Monoisotopic Mass

874.41396 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

[H][C@]12C=C(C)[C@@]3([H])C(C)=CCC\C(C)=C/[C@]4(C)C=C([C@H](C)C[C@]44OC(=O)C(=C4O)C(=O)[C@@]3(C)[C@]1([H])[C@@H](C)CC[C@@H]2O[C@@H]1O[C@H](C)[C@@H](OC(=O)C2=C(O)C=C(OC)C=C2C)[C@@H](O)[C@H]1O)C(O)=O

InChI Identifier

InChI=1S/C49H62O14/c1-22-12-11-13-23(2)36-26(5)17-30-33(61-46-39(52)38(51)40(28(7)60-46)62-44(57)34-25(4)16-29(59-10)18-32(34)50)15-14-24(3)37(30)48(36,9)41(53)35-42(54)49(63-45(35)58)20-27(6)31(43(55)56)21-47(49,8)19-22/h13,16-19,21,24,27-28,30,33,36-40,46,50-52,54H,11-12,14-15,20H2,1-10H3,(H,55,56)/b22-19-,23-13-/t24-,27+,28+,30+,33-,36+,37+,38-,39+,40+,46-,47+,48+,49+/m0/s1

InChI Key

FBBPNUSBCOHVCU-FAIIYYQZSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
ROESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2024-05-12	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2024-05-12	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2024-05-12	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2024-05-12	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2024-05-12	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2024-05-12	View Spectrum
ROESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2022-12-23	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2022-12-23	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2022-12-23	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2022-12-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2022-12-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)	taizong.wu@uq.edu.au	Not Available	Not Available	2022-12-23	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
sp. CMB-PB041		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

Not Available

References

General References

Not Available

Showing NP-Card for Glenthmycin D (NP0331391)

MOL for NP0331391 (Glenthmycin D)

3D MOL for NP0331391 (Glenthmycin D)

3D SDF for NP0331391 (Glenthmycin D)

3D-SDF for NP0331391 (Glenthmycin D)

PDB for NP0331391 (Glenthmycin D)

3D PDB for NP0331391 (Glenthmycin D)

SMILES for NP0331391 (Glenthmycin D)

INCHI for NP0331391 (Glenthmycin D)

Structure for NP0331391 (Glenthmycin D)

3D Structure for NP0331391 (Glenthmycin D)