NP-MRD: Showing NP-Card for cyclolactomycin D (NP0331260)

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Record Information

Version

2.0

Created at

2022-12-22 04:56:36 UTC

Updated at

2026-02-04 10:06:36 UTC

NP-MRD ID

NP0331260

Natural Product DOI

https://doi.org/10.57994/0158

Secondary Accession Numbers

None

Natural Product Identification

Common Name

cyclolactomycin D

Description

cyclolactomycin D was first documented in 2022 (PMID: 36200745).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652312222205562D          

 29 31  0  0  1  0            999 V2000
    3.9152   -6.9877    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0947   -7.0740    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7591   -7.8276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9386   -7.9139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4537   -7.2464    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6098   -6.4065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7893   -6.4928    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3044   -5.8253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6399   -5.0716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4604   -4.9854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7960   -4.2317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3110   -3.5643    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4860   -3.5643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2311   -2.7797    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4465   -2.5247    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8985   -2.2947    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3465   -1.6816    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5660   -2.7797    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4506   -1.6816    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1956   -0.8970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7477   -0.2839    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4927    0.5007    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6857    0.6722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1337    0.0591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0447    1.1138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8517    0.9423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1067    0.1576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5546   -0.4555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9136   -0.0139    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  2  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 12 11  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  1  6  0  0  0
 16 18  1  0  0  0  0
 12 18  1  0  0  0  0
 16 19  1  1  0  0  0
 19 20  2  0  0  0  0
 21 20  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 23 24  1  0  0  0  0
 22 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 21 28  1  0  0  0  0
 27 29  2  0  0  0  0
M  END


  Mrv1652312222205562D          

 29 31  0  0  1  0            999 V2000
    3.9152   -6.9877    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0947   -7.0740    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7591   -7.8276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9386   -7.9139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4537   -7.2464    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6098   -6.4065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7893   -6.4928    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3044   -5.8253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6399   -5.0716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4604   -4.9854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7960   -4.2317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3110   -3.5643    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4860   -3.5643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2311   -2.7797    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4465   -2.5247    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8985   -2.2947    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3465   -1.6816    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5660   -2.7797    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4506   -1.6816    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1956   -0.8970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7477   -0.2839    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4927    0.5007    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6857    0.6722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1337    0.0591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0447    1.1138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8517    0.9423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1067    0.1576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5546   -0.4555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9136   -0.0139    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  2  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 12 11  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  1  6  0  0  0
 16 18  1  0  0  0  0
 12 18  1  0  0  0  0
 16 19  1  1  0  0  0
 19 20  2  0  0  0  0
 21 20  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 23 24  1  0  0  0  0
 22 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 21 28  1  0  0  0  0
 27 29  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0331260

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@H]1C=CC(=O)O[C@H]1\C=C\[C@@]1(C)O[C@@H](C[C@H]1O)\C=C/C=C\[C@@H]1CCC[C@H](O)C1

> <INCHI_IDENTIFIER>
InChI=1S/C24H34O5/c1-3-18-11-12-23(27)28-21(18)13-14-24(2)22(26)16-20(29-24)10-5-4-7-17-8-6-9-19(25)15-17/h4-5,7,10-14,17-22,25-26H,3,6,8-9,15-16H2,1-2H3/b7-4-,10-5-,14-13+/t17-,18+,19+,20-,21+,22-,24-/m1/s1

> <INCHI_KEY>
URQIKVPULSONAN-YCPPNRAYSA-N

> <FORMULA>
C24H34O5

> <MOLECULAR_WEIGHT>
402.531

> <EXACT_MASS>
402.240624195

$$$$

HEADER    PROTEIN                                 22-DEC-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   22-DEC-22         0                                  
HETATM    1  O   UNK     0       7.308 -13.044   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       5.777 -13.205   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.150 -14.612   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.619 -14.773   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.714 -13.527   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.872 -11.959   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.340 -12.120   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.435 -10.874   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.061  -9.467   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.593  -9.306   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.219  -7.899   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.314  -6.653   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.774  -6.653   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.298  -5.189   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       0.833  -4.713   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       3.544  -4.284   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.513  -3.139   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.790  -5.189   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       4.574  -3.139   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.098  -1.674   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.129  -0.530   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.653   0.935   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.147   1.255   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.116   0.110   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.684   2.079   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.190   1.759   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       7.666   0.294   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       6.635  -0.850   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       9.172  -0.026   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    7                                                       
CONECT    6    2    7                                                       
CONECT    7    6    5    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   18                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   18   19                                             
CONECT   17   16                                                            
CONECT   18   16   12                                                       
CONECT   19   16   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   28                                                  
CONECT   22   21   23   25                                                  
CONECT   23   22   24                                                       
CONECT   24   23                                                            
CONECT   25   22   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27   21                                                       
CONECT   29   27                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₄H₃₄O₅

Average Mass

402.5310 Da

Monoisotopic Mass

402.24062 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC[C@H]1C=CC(=O)O[C@H]1\C=C\[C@@]1(C)O[C@@H](C[C@H]1O)\C=C/C=C\[C@@H]1CCC[C@H](O)C1

InChI Identifier

InChI=1S/C24H34O5/c1-3-18-11-12-23(27)28-21(18)13-14-24(2)22(26)16-20(29-24)10-5-4-7-17-8-6-9-19(25)15-17/h4-5,7,10-14,17-22,25-26H,3,6,8-9,15-16H2,1-2H3/b7-4-,10-5-,14-13+/t17-,18+,19+,20-,21+,22-,24-/m1/s1

InChI Key

URQIKVPULSONAN-YCPPNRAYSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CD3OD, experimental)	[email protected]	Not Available	Not Available	2022-12-22	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CD3OD, experimental)	[email protected]	Not Available	Not Available	2022-12-22	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CD3OD, experimental)	[email protected]	Not Available	Not Available	2022-12-22	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD3OD, experimental)	[email protected]	Not Available	Not Available	2022-12-22	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, CD3OD, experimental)	[email protected]	Not Available	Not Available	2022-12-22	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD3OD, experimental)	[email protected]	Not Available	Not Available	2022-12-22	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 600.0, Methanol-d4, simulated)	[email protected]	Not Available	Not Available	2026-02-04	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp. CMB-MW079		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

Not Available

References

General References

Showing NP-Card for cyclolactomycin D (NP0331260)

MOL for NP0331260 (cyclolactomycin D)

3D MOL for NP0331260 (cyclolactomycin D)

3D SDF for NP0331260 (cyclolactomycin D)

3D-SDF for NP0331260 (cyclolactomycin D)

PDB for NP0331260 (cyclolactomycin D)

3D PDB for NP0331260 (cyclolactomycin D)

SMILES for NP0331260 (cyclolactomycin D)

INCHI for NP0331260 (cyclolactomycin D)

Structure for NP0331260 (cyclolactomycin D)

3D Structure for NP0331260 (cyclolactomycin D)