NP-MRD: Showing NP-Card for (1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol (NP0329938)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-12 14:49:05 UTC

Updated at

2022-09-12 14:49:05 UTC

NP-MRD ID

NP0329938

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol

Description

Ircinol A belongs to the class of organic compounds known as azaspirodecane derivatives. These are organic compounds containing a spirodecane moiety with at least one nitrogen atom. (1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol was first documented in 2006 (PMID: 16872140). Based on a literature review very few articles have been published on Ircinol A (PMID: 23039372).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122216492D          

 30 34  0  0  1  0            999 V2000
    0.8379    0.4820    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4666    1.0163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2436    0.7390    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8722    1.2732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6492    0.9959    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7916    1.8085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4671    0.9926    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2050    0.6237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6869   -0.0459    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8025   -0.8628    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5252   -1.6398    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9185   -2.1989    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1216   -2.4121    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3168   -2.2305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6886   -1.6957    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9116   -1.4184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7633   -0.6068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3919   -0.0726    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1689   -0.3499    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5934   -1.0760    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3054   -1.0501    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7347   -1.7546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5364   -1.9492    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2409   -1.5199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4355   -0.7181    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0061   -0.0136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2044    0.1809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4999   -0.2484    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7976    0.1844    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3173   -1.1614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 18 17  1  1  0  0  0
  3 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 21 28  1  1  0  0  0
 29 28  1  6  0  0  0
  5 29  1  0  0  0  0
 19 29  1  0  0  0  0
 19 30  1  0  0  0  0
 15 30  1  0  0  0  0
M  END

     RDKit          3D

 70 74  0  0  0  0  0  0  0  0999 V2000
   -1.1565    4.5460   -0.4362 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0586    4.1161   -0.9790 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2185    2.6299   -0.8650 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3636    1.8793   -1.9171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2934    0.5637   -1.9830 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3701    0.7631   -2.8944 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5731   -0.4802   -2.6538 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0137   -0.4153   -2.2027 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4466   -1.8108   -1.9565 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3580   -2.1544   -1.0636 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2322   -1.1530   -0.4486 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6022   -1.6661    0.9510 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3230   -2.0857    1.6426 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6582   -0.9181    2.3358 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0557    0.0009    1.3902 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0714    1.3143    2.0551 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6315    2.2666    0.9886 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2311    2.0040    0.4705 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2047    0.6028    0.5392 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4226    0.5706    1.4936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5743    1.0181    0.6394 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8800    0.6652    1.2058 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5932   -0.4149    1.5224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3549   -1.8764    1.4316 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4433   -2.3400   -0.0293 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1622   -1.8441   -0.6844 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2384   -0.4396   -1.1528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2796    0.4599   -0.6291 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9112    0.0996   -0.7166 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7349   -0.4082    1.1011 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9213    4.0325   -0.7953 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8875    4.6119   -0.4324 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1048    4.4404   -2.0279 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9604    2.1834   -2.7871 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9775    1.1480   -3.7103 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5297   -0.2974   -3.7461 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1200   -1.4545   -2.4659 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6478   -0.0423   -3.0535 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1755    0.2739   -1.3805 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0120   -2.6517   -2.5262 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4705   -3.2140   -0.7697 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8274   -0.1544   -0.3166 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1669   -1.1050   -1.0805 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1009   -0.8607    1.4879 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3009   -2.5313    0.8730 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6332   -2.7905    2.4640 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6363   -2.6354    0.9989 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9716   -1.2380    3.1353 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4839   -0.3503    2.8504 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1417    1.5216    2.2566 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4551    1.3291    2.9559 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7314    3.3266    1.2745 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3518    2.1310    0.1283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4097    2.6923    1.1155 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5599   -0.4157    1.9344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2765    1.3036    2.3028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4860    2.1274    0.5491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4657    1.5446    1.4514 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5722   -0.2134    1.9434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3562   -2.1693    1.8040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1103   -2.4418    1.9812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5240   -3.4319   -0.0627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2926   -1.8365   -0.5333 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9729   -2.5684   -1.5312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3566   -2.0474    0.0459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2450   -0.0411   -0.8838 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2592   -0.4634   -2.2828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7563   -1.0158   -0.6884 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7929   -1.2481    0.3458 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3519   -0.9413    2.0211 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  6
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  1
 20 21  1  0
 21 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 19 30  1  0
 18  3  1  0
 29 19  1  0
 29  5  1  0
 30 15  1  0
 28 21  1  0
  1 31  1  0
  2 32  1  0
  2 33  1  0
  4 34  1  0
  6 35  1  0
  7 36  1  0
  7 37  1  0
  8 38  1  0
  8 39  1  0
  9 40  1  0
 10 41  1  0
 11 42  1  0
 11 43  1  0
 12 44  1  0
 12 45  1  0
 13 46  1  0
 13 47  1  0
 14 48  1  0
 14 49  1  0
 16 50  1  0
 16 51  1  0
 17 52  1  0
 17 53  1  0
 18 54  1  1
 20 55  1  0
 20 56  1  0
 21 57  1  6
 22 58  1  0
 23 59  1  0
 24 60  1  0
 24 61  1  0
 25 62  1  0
 25 63  1  0
 26 64  1  0
 26 65  1  0
 27 66  1  0
 27 67  1  0
 29 68  1  6
 30 69  1  0
 30 70  1  0
M  END


  Mrv1652309122216492D          

 30 34  0  0  1  0            999 V2000
    0.8379    0.4820    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4666    1.0163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2436    0.7390    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8722    1.2732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6492    0.9959    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7916    1.8085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4671    0.9926    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2050    0.6237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6869   -0.0459    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8025   -0.8628    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5252   -1.6398    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9185   -2.1989    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1216   -2.4121    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3168   -2.2305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6886   -1.6957    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9116   -1.4184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7633   -0.6068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3919   -0.0726    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1689   -0.3499    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5934   -1.0760    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3054   -1.0501    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7347   -1.7546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5364   -1.9492    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2409   -1.5199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4355   -0.7181    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0061   -0.0136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2044    0.1809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4999   -0.2484    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7976    0.1844    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3173   -1.1614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 18 17  1  1  0  0  0
  3 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 21 28  1  1  0  0  0
 29 28  1  6  0  0  0
  5 29  1  0  0  0  0
 19 29  1  0  0  0  0
 19 30  1  0  0  0  0
 15 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0329938

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OCC1=C[C@@]2(O)CC\C=C/CCCCN3CC[C@@H]1[C@]1(C[C@@H]4\C=C/CCCCN4[C@@H]21)C3

> <INCHI_IDENTIFIER>
InChI=1S/C26H40N2O2/c29-19-21-17-26(30)13-8-4-1-2-5-9-14-27-16-12-23(21)25(20-27)18-22-11-7-3-6-10-15-28(22)24(25)26/h1,4,7,11,17,22-24,29-30H,2-3,5-6,8-10,12-16,18-20H2/b4-1-,11-7-/t22-,23-,24+,25-,26-/m0/s1

> <INCHI_KEY>
HRIGHPKJBOCXKN-ZDWSRKPSSA-N

> <FORMULA>
C26H40N2O2

> <MOLECULAR_WEIGHT>
412.618

> <EXACT_MASS>
412.308978536

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
47.98760383294724

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2R,4R,5Z,12R,13S,16Z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1^{2,22}.0^{2,12}.0^{4,11}]heptacosa-5,16,25-trien-13-ol

> <JCHEM_LOGP>
2.965758876666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
2

> <JCHEM_PKA>
15.170533045893002

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.759463877578757

> <JCHEM_PKA_STRONGEST_BASIC>
10.986189297325106

> <JCHEM_POLAR_SURFACE_AREA>
46.940000000000005

> <JCHEM_REFRACTIVITY>
126.36869999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,4R,5Z,12R,13S,16Z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1^{2,22}.0^{2,12}.0^{4,11}]heptacosa-5,16,25-trien-13-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  O   UNK     0       1.564   0.900   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.738   1.897   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.188   1.379   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.361   2.377   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.812   1.859   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       7.078   3.376   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       8.339   1.853   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.716   1.164   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.616  -0.086   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.831  -1.611   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.314  -3.061   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.181  -4.105   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.694  -4.503   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.191  -4.164   0.000  0.00  0.00           C+0
HETATM   15  N   UNK     0       5.019  -3.165   0.000  0.00  0.00           N+0
HETATM   16  C   UNK     0       3.568  -2.648   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.291  -1.133   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.465  -0.135   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.915  -0.653   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.708  -2.008   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.037  -1.960   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.838  -3.275   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.335  -3.638   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      11.650  -2.837   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      12.013  -1.341   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      11.211  -0.025   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       9.715   0.338   0.000  0.00  0.00           C+0
HETATM   28  N   UNK     0       8.400  -0.464   0.000  0.00  0.00           N+0
HETATM   29  C   UNK     0       7.089   0.344   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       6.192  -2.168   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   18                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7   29                                             
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   30                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17    3   19                                                  
CONECT   19   18   20   29   30                                             
CONECT   20   19   21                                                       
CONECT   21   20   22   28                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   21   29                                                  
CONECT   29   28    5   19                                                  
CONECT   30   19   15                                                       
MASTER        0    0    0    0    0    0    0    0   30    0   68    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₄₀N₂O₂

Average Mass

412.6180 Da

Monoisotopic Mass

412.30898 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

OCC1=C[C@@]2(O)CC\C=C/CCCCN3CC[C@@H]1[C@]1(C[C@@H]4\C=C/CCCCN4[C@@H]21)C3

InChI Identifier

InChI=1S/C26H40N2O2/c29-19-21-17-26(30)13-8-4-1-2-5-9-14-27-16-12-23(21)25(20-27)18-22-11-7-3-6-10-15-28(22)24(25)26/h1,4,7,11,17,22-24,29-30H,2-3,5-6,8-10,12-16,18-20H2/b4-1-,11-7-/t22-,23-,24+,25-,26-/m0/s1

InChI Key

HRIGHPKJBOCXKN-ZDWSRKPSSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as azaspirodecane derivatives. These are organic compounds containing a spirodecane moiety with at least one nitrogen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Azaspirodecane derivatives

Sub Class

Not Available

Direct Parent

Azaspirodecane derivatives

Alternative Parents

Substituents

Azaspirodecane
Indole or derivatives
Piperidine
N-alkylpyrrolidine
Tertiary alcohol
Pyrrolidine
Tertiary aliphatic amine
Tertiary amine
Azacycle
Primary alcohol
Alcohol
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Organic nitrogen compound
Amine
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00000518

Chemspider ID

9179380

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11004188

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Rao KV, Donia MS, Peng J, Garcia-Palomero E, Alonso D, Martinez A, Medina M, Franzblau SG, Tekwani BL, Khan SI, Wahyuono S, Willett KL, Hamann MT: Manzamine B and E and ircinal A related alkaloids from an Indonesian Acanthostrongylophora sponge and their activity against infectious, tropical parasitic, and Alzheimer's diseases. J Nat Prod. 2006 Jul;69(7):1034-40. doi: 10.1021/np0601399. [PubMed:16872140 ]
Jakubec P, Hawkins A, Felzmann W, Dixon DJ: Total synthesis of manzamine A and related alkaloids. J Am Chem Soc. 2012 Oct 24;134(42):17482-5. doi: 10.1021/ja308826x. Epub 2012 Oct 16. [PubMed:23039372 ]
LOTUS database [Link]

Showing NP-Card for (1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol (NP0329938)

MOL for NP0329938 ((1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol)

3D MOL for NP0329938 ((1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol)

3D SDF for NP0329938 ((1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol)

3D-SDF for NP0329938 ((1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol)

PDB for NP0329938 ((1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol)

3D PDB for NP0329938 ((1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol)

SMILES for NP0329938 ((1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol)

INCHI for NP0329938 ((1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol)

Structure for NP0329938 ((1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol)

3D Structure for NP0329938 ((1r,2r,4r,5z,12r,13s,16z)-25-(hydroxymethyl)-11,22-diazapentacyclo[11.11.2.1²,²².0²,¹².0⁴,¹¹]heptacosa-5,16,25-trien-13-ol)