NP-MRD: Showing NP-Card for 5-octadecynoic acid (NP0329867)

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Record Information

Version

2.0

Created at

2022-09-12 14:40:57 UTC

Updated at

2022-09-12 14:40:57 UTC

NP-MRD ID

NP0329867

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-octadecynoic acid

Description

5-Octadecynoic acid, also known as 5-octadecynoate, belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. 5-Octadecynoic acid is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Outside of the human body, 5-Octadecynoic acid has been detected, but not quantified in, fruits. 5-octadecynoic acid is found in Ximenia americana. This could make 5-octadecynoic acid a potential biomarker for the consumption of these foods.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 52 51  0  0  0  0  0  0  0  0999 V2000
   -4.8790    1.9593    1.5387 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2216    1.4976    1.1558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3969    0.2879    0.3328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8186    0.2511   -1.0236 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3289    0.3352   -1.0334 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7344   -0.8481   -0.2969 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2144   -0.6910   -0.3439 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5664   -1.8478    0.3784 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0698   -1.6609    0.3348 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4269   -1.6290   -1.0665 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9256   -1.4774   -1.1100 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3267   -0.1925   -0.4366 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8092   -0.1059   -0.5338 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0097   -0.0518   -0.6069 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4905   -0.0027   -0.6961 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0524   -0.3946    0.6446 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5625    0.5606    1.6924 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9739    1.9460    1.4960 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7387    2.2629    0.5570 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5592    2.9942    2.3149 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9610    2.4095    2.5869 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0781    1.2236    1.6301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5080    2.8302    0.9201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7774    2.3847    0.7252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7998    1.3189    2.1187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0879   -0.5935    0.9610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5121    0.1211    0.2199 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0836   -0.7274   -1.5337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2713    1.0266   -1.7040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0225    0.2631   -2.1362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9490    1.3034   -0.7257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9405   -1.8024   -0.8256 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1304   -0.9486    0.7134 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9589   -0.6965   -1.4218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9462    0.2737    0.0788 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7903   -2.8050   -0.1393 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9211   -1.9045    1.4343 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4664   -2.3719    0.9838 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0959   -0.6426    0.8019 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1843   -2.5498   -1.6417 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0160   -0.7340   -1.6011 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4206   -2.3613   -0.6458 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2746   -1.4975   -2.1788 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0447   -0.2720    0.6540 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9037    0.6953   -0.9207 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8462   -0.7385   -1.4585 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7373    1.0065   -1.0235 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1601   -0.4772    0.6258 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5909   -1.4028    0.8713 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9000    0.1623    2.6757 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4417    0.4386    1.7094 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0103    3.8749    2.3773 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  3  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 20  1  0
 18 19  2  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  2 24  1  0
  2 25  1  0
  3 26  1  0
  3 27  1  0
  4 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  6 32  1  0
  6 33  1  0
  7 34  1  0
  7 35  1  0
  8 36  1  0
  8 37  1  0
  9 38  1  0
  9 39  1  0
 10 40  1  0
 10 41  1  0
 11 42  1  0
 11 43  1  0
 12 44  1  0
 12 45  1  0
 15 46  1  0
 15 47  1  0
 16 48  1  0
 16 49  1  0
 17 50  1  0
 17 51  1  0
 20 52  1  0
M  END


  Mrv0541 05061305432D          

 20 19  0  0  0  0            999 V2000
    5.4730    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1875    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9020    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6164    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3309    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0454    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7599    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4743    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1888    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9033    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6177    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3322    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0467    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7612    4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4756    4.8099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1901    4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9046    4.8099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6190    4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.3335    4.8099    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.6190    3.5724    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  3  0  0  0  0
 15 14  1  0  0  0  0
 16 15  1  0  0  0  0
 17 16  1  0  0  0  0
 18 17  1  0  0  0  0
 19 18  2  0  0  0  0
 20 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0329867

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCC#CCCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C18H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h2-12,15-17H2,1H3,(H,19,20)

> <INCHI_KEY>
GDBJCCBRRCYCEG-UHFFFAOYSA-N

> <FORMULA>
C18H32O2

> <MOLECULAR_WEIGHT>
280.4455

> <EXACT_MASS>
280.240230268

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
37.29793621765294

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
octadec-5-ynoic acid

> <ALOGPS_LOGP>
6.93

> <JCHEM_LOGP>
6.730426772333334

> <ALOGPS_LOGS>
-5.59

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.559675983470112

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
85.64699999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.28e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-octadecynoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      10.216   7.438   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.550   6.668   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      12.884   7.438   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      14.217   6.668   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      15.551   7.438   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      16.885   6.668   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      18.218   7.438   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      19.552   6.668   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      20.886   7.438   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      22.219   6.668   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      23.553   7.438   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      24.887   6.668   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      26.221   7.438   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      27.554   8.208   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      28.888   8.978   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      30.222   8.208   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      31.555   8.978   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      32.889   8.208   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      34.223   8.978   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      32.889   6.668   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   38    0
END

View in JSmol

Synonyms

Value	Source
5-Octadecynoate	Generator

Chemical Formula

C₁₈H₃₂O₂

Average Mass

280.4455 Da

Monoisotopic Mass

280.24023 Da

IUPAC Name

octadec-5-ynoic acid

Traditional Name

5-octadecynoic acid

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCC#CCCCC(O)=O

InChI Identifier

InChI=1S/C18H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h2-12,15-17H2,1H3,(H,19,20)

InChI Key

GDBJCCBRRCYCEG-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ximenia americana	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Unsaturated fatty acid
Straight chain fatty acid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Unsaturated fatty acids (LMFA01030566 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.93	ALOGPS
logP	6.73	ChemAxon
logS	-5.6	ALOGPS
pKa (Strongest Acidic)	4.56	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	85.65 m³·mol⁻¹	ChemAxon
Polarizability	37.3 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0031097

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB003103

KNApSAcK ID

Not Available

Chemspider ID

4472119

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5312694

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-octadecynoic acid (NP0329867)

MOL for NP0329867 (5-octadecynoic acid)

3D MOL for NP0329867 (5-octadecynoic acid)

3D SDF for NP0329867 (5-octadecynoic acid)

3D-SDF for NP0329867 (5-octadecynoic acid)

PDB for NP0329867 (5-octadecynoic acid)

3D PDB for NP0329867 (5-octadecynoic acid)

SMILES for NP0329867 (5-octadecynoic acid)

INCHI for NP0329867 (5-octadecynoic acid)

Structure for NP0329867 (5-octadecynoic acid)

3D Structure for NP0329867 (5-octadecynoic acid)