NP-MRD: Showing NP-Card for (2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol (NP0329658)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-12 14:14:44 UTC

Updated at

2022-09-12 14:14:44 UTC

NP-MRD ID

NP0329658

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Description

(2S,3R,4S,5S,6R)-2-{[(1S,4aS,5R,7S,7aS)-7-(chloromethyl)-5,7-dihydroxy-1H,4aH,5H,6H,7H,7aH-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol belongs to the class of organic compounds known as iridoid o-glycosides. These are iridoid monoterpenes containing a glycosyl (usually a pyranosyl) moiety linked to the iridoid skeleton. (2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol is found in Myoporum bontioides. Based on a literature review very few articles have been published on (2S,3R,4S,5S,6R)-2-{[(1S,4aS,5R,7S,7aS)-7-(chloromethyl)-5,7-dihydroxy-1H,4aH,5H,6H,7H,7aH-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122216142D          

 25 27  0  0  1  0            999 V2000
    6.8513    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1368    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4223    2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7079    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2789    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9934    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5645    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7798    1.0799    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1154    1.8336    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0654    1.4924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3509    1.0799    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    1.2949    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7798   -0.2549    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5249   -1.0396    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    3.3000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2789    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7079    3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7079    4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4223    3.3000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.1368    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  7  6  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 11 10  1  6  0  0  0
 12 11  1  1  0  0  0
  7 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  1  0  0  0
 15 16  1  0  0  0  0
 13 17  1  0  0  0  0
 17 18  1  0  0  0  0
 11 18  1  0  0  0  0
 18 19  1  6  0  0  0
  5 20  1  0  0  0  0
 20 21  1  6  0  0  0
 20 22  1  0  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
  3 24  1  0  0  0  0
 24 25  1  6  0  0  0
M  END

     RDKit          3D

 48 50  0  0  0  0  0  0  0  0999 V2000
    0.6784   -2.3376   -3.5034 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8843   -2.4624   -2.8336 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0249   -1.4551   -1.7199 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0102   -1.6416   -0.8172 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1345   -0.8100    0.2771 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0297   -0.6939    1.0627 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4635    0.6103    1.1732 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2914    1.0921    2.5068 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3350    1.0863    3.4557 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4838    1.5496    2.9808 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4113    1.9664    1.5668 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8874    0.7319    0.8197 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2838    1.0066   -0.5631 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9750   -0.1399   -1.0348 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2309    1.2938   -1.5662 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3661    2.8131   -1.3342 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -3.3674    2.0955   -0.5459 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7543    2.1281    0.9156 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6164    1.0817    1.2318 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3704   -1.2657    1.0379 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4423   -0.7100    2.2955 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5603   -0.8608    0.1580 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7661   -1.1693    0.7430 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4087   -1.5967   -1.1427 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2948   -1.0683   -2.0965 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7552   -1.7633   -4.3137 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6987   -2.2489   -3.5663 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9976   -3.4878   -2.4059 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9201   -0.4501   -2.1947 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3864    0.2224   -0.1065 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1931    1.2511    0.5568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2067    0.7388    4.4659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3529    1.6020    3.5843 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8063    2.8505    1.3766 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4247   -0.1557    1.2616 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0315   -0.8418   -0.3694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5869    0.4177   -1.6851 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7645    1.3795   -2.5627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8820    3.0852   -0.7584 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1926    1.8747   -1.2206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1473    3.1201    1.1771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0876    1.3324    2.0636 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3863   -2.3848    1.0511 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2419   -1.4415    2.9463 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4877    0.2235   -0.0661 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7599   -2.1249    0.9799 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6665   -2.6679   -1.0130 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8513   -1.7756   -2.4924 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 18  1  0
 18 19  1  0
 18 17  1  0
 17 13  1  0
 13 14  1  6
 13 15  1  0
 15 16  1  0
 13 12  1  0
  5 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 24  3  1  0
 12  7  1  0
 12 11  1  0
  1 26  1  0
  2 27  1  0
  2 28  1  0
  3 29  1  6
  5 30  1  6
  7 31  1  6
  9 32  1  0
 10 33  1  0
 11 34  1  1
 18 41  1  1
 19 42  1  0
 17 39  1  0
 17 40  1  0
 14 36  1  0
 15 37  1  0
 15 38  1  0
 12 35  1  1
 20 43  1  1
 21 44  1  0
 22 45  1  6
 23 46  1  0
 24 47  1  1
 25 48  1  0
M  END


  Mrv1652309122216142D          

 25 27  0  0  1  0            999 V2000
    6.8513    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1368    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4223    2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7079    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2789    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9934    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5645    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7798    1.0799    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1154    1.8336    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0654    1.4924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3509    1.0799    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    1.2949    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7798   -0.2549    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5249   -1.0396    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    3.3000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2789    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7079    3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7079    4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4223    3.3000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.1368    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  7  6  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 11 10  1  6  0  0  0
 12 11  1  1  0  0  0
  7 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  1  0  0  0
 15 16  1  0  0  0  0
 13 17  1  0  0  0  0
 17 18  1  0  0  0  0
 11 18  1  0  0  0  0
 18 19  1  6  0  0  0
  5 20  1  0  0  0  0
 20 21  1  6  0  0  0
 20 22  1  0  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
  3 24  1  0  0  0  0
 24 25  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0329658

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC[C@H]1O[C@@H](O[C@@H]2OC=C[C@@H]3[C@H](O)C[C@@](O)(CCl)[C@@H]23)[C@H](O)[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C15H23ClO9/c16-5-15(22)3-7(18)6-1-2-23-13(9(6)15)25-14-12(21)11(20)10(19)8(4-17)24-14/h1-2,6-14,17-22H,3-5H2/t6-,7-,8-,9-,10-,11+,12-,13+,14+,15-/m1/s1

> <INCHI_KEY>
BGKKWSNXGCFWIU-HDFMDOACSA-N

> <FORMULA>
C15H23ClO9

> <MOLECULAR_WEIGHT>
382.79

> <EXACT_MASS>
382.10306

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
35.877760882234284

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,4S,5S,6R)-2-{[(1S,4aS,5R,7S,7aS)-7-(chloromethyl)-5,7-dihydroxy-1H,4aH,5H,6H,7H,7aH-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_LOGP>
-2.5486206449999997

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.048121743118433

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.186149445151218

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8980468712199947

> <JCHEM_POLAR_SURFACE_AREA>
149.07

> <JCHEM_REFRACTIVITY>
82.6555

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5S,6R)-2-{[(1S,4aS,5R,7S,7aS)-7-(chloromethyl)-5,7-dihydroxy-1H,4aH,5H,6H,7aH-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  O   UNK     0      12.789   4.620   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      11.455   3.850   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.122   4.620   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       8.788   3.850   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       7.454   4.620   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       6.121   3.850   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       6.121   2.310   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       7.454   1.540   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       7.454   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.121  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.787   0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.787   1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.322   2.016   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       3.949   3.423   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       1.989   2.786   0.000  0.00  0.00           C+0
HETATM   16 Cl   UNK     0       0.655   2.016   0.000  0.00  0.00          Cl+0
HETATM   17  C   UNK     0       2.417   0.770   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.322  -0.476   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       2.846  -1.941   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       7.454   6.160   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       6.121   6.930   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       8.788   6.930   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       8.788   8.470   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      10.122   6.160   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      11.455   6.930   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   24                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   20                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   12                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   18                                                  
CONECT   12   11    7   13                                                  
CONECT   13   12   14   15   17                                             
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15                                                            
CONECT   17   13   18                                                       
CONECT   18   17   11   19                                                  
CONECT   19   18                                                            
CONECT   20    5   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22    3   25                                                  
CONECT   25   24                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   54    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₃ClO₉

Average Mass

382.7900 Da

Monoisotopic Mass

382.10306 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

OC[C@H]1O[C@@H](O[C@@H]2OC=C[C@@H]3[C@H](O)C[C@@](O)(CCl)[C@@H]23)[C@H](O)[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C15H23ClO9/c16-5-15(22)3-7(18)6-1-2-23-13(9(6)15)25-14-12(21)11(20)10(19)8(4-17)24-14/h1-2,6-14,17-22H,3-5H2/t6-,7-,8-,9-,10-,11+,12-,13+,14+,15-/m1/s1

InChI Key

BGKKWSNXGCFWIU-HDFMDOACSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Myoporum bontioides	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as iridoid o-glycosides. These are iridoid monoterpenes containing a glycosyl (usually a pyranosyl) moiety linked to the iridoid skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Iridoid O-glycosides

Alternative Parents

Substituents

Iridoid o-glycoside
Hexose monosaccharide
O-glycosyl compound
Iridoid-skeleton
Glycosyl compound
Monoterpenoid
Bicyclic monoterpenoid
Oxane
Monosaccharide
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Halohydrin
Chlorohydrin
Oxacycle
Organoheterocyclic compound
Polyol
Acetal
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Organochloride
Organohalogen compound
Alkyl halide
Alkyl chloride
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163052255

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol (NP0329658)

MOL for NP0329658 ((2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D MOL for NP0329658 ((2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D SDF for NP0329658 ((2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D-SDF for NP0329658 ((2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

PDB for NP0329658 ((2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D PDB for NP0329658 ((2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

SMILES for NP0329658 ((2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

INCHI for NP0329658 ((2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

Structure for NP0329658 ((2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D Structure for NP0329658 ((2s,3r,4s,5s,6r)-2-{[(1s,4as,5r,7s,7as)-7-(chloromethyl)-5,7-dihydroxy-1h,4ah,5h,6h,7ah-cyclopenta[c]pyran-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)