NP-MRD: Showing NP-Card for guibourtinidol-7-methyl ether (NP0329651)

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Record Information

Version

2.0

Created at

2022-09-12 14:14:00 UTC

Updated at

2022-09-12 14:14:00 UTC

NP-MRD ID

NP0329651

Secondary Accession Numbers

None

Natural Product Identification

Common Name

guibourtinidol-7-methyl ether

Description

Guibourtinidol-7-methyl ether belongs to the class of organic compounds known as 7-o-methylated flavonoids. These are flavonoids with methoxy groups attached to the C7 atom of the flavonoid backbone. Thus, guibourtinidol-7-methyl ether is considered to be a flavonoid. guibourtinidol-7-methyl ether is found in Crinum bulbispermum. It was first documented in 2022 (PMID: 36130424). Based on a literature review a significant number of articles have been published on Guibourtinidol-7-methyl ether (PMID: 36130081) (PMID: 36128672) (PMID: 36127612) (PMID: 36127577).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 38  0  0  0  0  0  0  0  0999 V2000
    5.9011   -1.4471   -1.1845 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5297   -1.7801   -1.2701 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6017   -0.9322   -0.6837 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9707    0.2258   -0.0191 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0171    1.0223    0.5387 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6586    0.7050    0.4614 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2804   -0.4459   -0.1981 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2558   -1.2324   -0.7517 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0708   -0.7565   -0.2720 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9677   -0.0487    0.5302 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3832   -0.2244    0.1029 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7774   -0.1544   -1.2131 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1007   -0.3223   -1.5752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0814   -0.5667   -0.6370 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4199   -0.7375   -0.9939 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6954   -0.6386    0.6852 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3570   -0.4684    1.0482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6385    1.4366    0.3711 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6378    2.2343    0.9148 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6918    1.6356    1.1008 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0973   -0.4325   -1.5930 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5153   -2.2289   -1.6722 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1994   -1.4269   -0.1143 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0371    0.4271    0.0129 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3593    1.9227    1.0508 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9419   -2.1340   -1.2669 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8639   -0.3462    1.5781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0086    0.0382   -1.9589 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4145   -0.2675   -2.6136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0690    0.0621   -1.0454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4630   -0.8322    1.4432 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0569   -0.5248    2.0806 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4945    1.5982   -0.7161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1229    2.6467    0.1424 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5434    1.3038    2.1574 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0226    2.6894    1.0465 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6 20  1  0
 20 18  1  0
 18 19  1  0
 18 10  1  0
 10  9  1  0
  9  7  1  0
  7  8  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 14 16  1  0
 16 17  2  0
  8  3  1  0
 17 11  1  0
  7  6  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  4 24  1  0
  5 25  1  0
 20 35  1  0
 20 36  1  0
 18 33  1  6
 19 34  1  0
 10 27  1  1
  8 26  1  0
 12 28  1  0
 13 29  1  0
 15 30  1  0
 16 31  1  0
 17 32  1  0
M  END


  Mrv1652309122216142D          

 20 22  0  0  1  0            999 V2000
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 11 17  1  0  0  0  0
 10 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
  6 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0329651

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C2C[C@H](O)[C@H](OC2=C1)C1=CC=C(O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C16H16O4/c1-19-13-7-4-11-8-14(18)16(20-15(11)9-13)10-2-5-12(17)6-3-10/h2-7,9,14,16-18H,8H2,1H3/t14-,16+/m0/s1

> <INCHI_KEY>
XPHACJZIOXWENC-GOEBONIOSA-N

> <FORMULA>
C16H16O4

> <MOLECULAR_WEIGHT>
272.3

> <EXACT_MASS>
272.104858995

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
28.50607875237343

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,3S)-2-(4-hydroxyphenyl)-7-methoxy-3,4-dihydro-2H-1-benzopyran-3-ol

> <JCHEM_LOGP>
2.5481317146666664

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.979726587652618

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.46982244260763

> <JCHEM_PKA_STRONGEST_BASIC>
-3.2627995296443695

> <JCHEM_POLAR_SURFACE_AREA>
58.92

> <JCHEM_REFRACTIVITY>
74.5202

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
guibourtinidol-7-methyl ether

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0      -4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.667   0.000   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       2.667  -0.000   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       9.336   2.310   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       8.002  -0.000   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   20                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7    3                                                       
CONECT    9    7   10                                                       
CONECT   10    9   11   18                                                  
CONECT   11   10   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   11                                                       
CONECT   18   10   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18    6                                                       
MASTER        0    0    0    0    0    0    0    0   20    0   44    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₁₆O₄

Average Mass

272.3000 Da

Monoisotopic Mass

272.10486 Da

IUPAC Name

(2R,3S)-2-(4-hydroxyphenyl)-7-methoxy-3,4-dihydro-2H-1-benzopyran-3-ol

Traditional Name

guibourtinidol-7-methyl ether

CAS Registry Number

Not Available

SMILES

COC1=CC=C2C[C@H](O)[C@H](OC2=C1)C1=CC=C(O)C=C1

InChI Identifier

InChI=1S/C16H16O4/c1-19-13-7-4-11-8-14(18)16(20-15(11)9-13)10-2-5-12(17)6-3-10/h2-7,9,14,16-18H,8H2,1H3/t14-,16+/m0/s1

InChI Key

XPHACJZIOXWENC-GOEBONIOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Crinum bulbispermum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 7-o-methylated flavonoids. These are flavonoids with methoxy groups attached to the C7 atom of the flavonoid backbone.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Flavonoids

Sub Class

O-methylated flavonoids

Direct Parent

7-O-methylated flavonoids

Alternative Parents

Substituents

7-methoxyflavonoid-skeleton
3-hydroxyflavonoid
4'-hydroxyflavonoid
Flavan-3-ol
Hydroxyflavonoid
Flavan
Chromane
Benzopyran
1-benzopyran
Phenol ether
Anisole
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Phenol
Benzenoid
Monocyclic benzene moiety
Secondary alcohol
Organoheterocyclic compound
Oxacycle
Ether
Organooxygen compound
Organic oxygen compound
Alcohol
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Flavans, Flavanols and Leucoanthocyanidins (LMPK12020008 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.55	ChemAxon
pKa (Strongest Acidic)	9.47	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	58.92 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	74.52 m³·mol⁻¹	ChemAxon
Polarizability	28.51 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00013260

Chemspider ID

24842493

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15549896

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Shashoua Y, Peydaei A, Mortensen MN, Kanstrup AB, Gregory DJ: Real time degradation studies on polyurethane household sponges in Danish weather and marine environments. Mar Pollut Bull. 2022 Nov;184:114128. doi: 10.1016/j.marpolbul.2022.114128. Epub 2022 Sep 18. [PubMed:36130424 ]
Xu W, Yang R, Hao Y, Song H, Liu Y, Zhang J, Li Y, Wang Q: Discovery of Aldisine and Its Derivatives as Novel Antiviral, Larvicidal, and Antiphytopathogenic-Fungus Agents. J Agric Food Chem. 2022 Oct 5;70(39):12355-12363. doi: 10.1021/acs.jafc.2c04256. Epub 2022 Sep 21. [PubMed:36130081 ]
Gholamalipour Alamdari E, Taleghani A: New bioactive compounds characterized by liquid chromatography-mass spectrometry and gas chromatography-mass spectrometry in hydro-methanol and petroleum ether extracts of Prosopis farcta (Banks & Sol.) J. F. Macbr weed. J Mass Spectrom. 2022 Sep;57(9):e4884. doi: 10.1002/jms.4884. [PubMed:36128672 ]
Munar A, Clinton Frazee C 3rd, Garg U: Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) Method for the Quantification of Steroids Androstenedione, Dehydroepiandrosterone, 11-Deoxycortisol, 17-Hydroxyprogesterone, and Testosterone. Methods Mol Biol. 2022;2546:451-457. doi: 10.1007/978-1-0716-2565-1_40. [PubMed:36127612 ]
van der Gugten JG, Holmes DT: Quantitation of Aldosterone in Serum or Plasma Using Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS). Methods Mol Biol. 2022;2546:45-54. doi: 10.1007/978-1-0716-2565-1_5. [PubMed:36127577 ]
LOTUS database [Link]

Showing NP-Card for guibourtinidol-7-methyl ether (NP0329651)

MOL for NP0329651 (guibourtinidol-7-methyl ether)

3D MOL for NP0329651 (guibourtinidol-7-methyl ether)

3D SDF for NP0329651 (guibourtinidol-7-methyl ether)

3D-SDF for NP0329651 (guibourtinidol-7-methyl ether)

PDB for NP0329651 (guibourtinidol-7-methyl ether)

3D PDB for NP0329651 (guibourtinidol-7-methyl ether)

SMILES for NP0329651 (guibourtinidol-7-methyl ether)

INCHI for NP0329651 (guibourtinidol-7-methyl ether)

Structure for NP0329651 (guibourtinidol-7-methyl ether)

3D Structure for NP0329651 (guibourtinidol-7-methyl ether)