NP-MRD: Showing NP-Card for 1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione (NP0329498)

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Record Information

Version

2.0

Created at

2022-09-12 13:56:35 UTC

Updated at

2022-09-12 13:56:36 UTC

NP-MRD ID

NP0329498

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione

Description

1,6',13'-Trihydroxy-4',4',7,7-tetramethyl-2,7-dihydro-1H-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]Tetradecan]-13'-ene-2,8'-dione belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. 1,6',13'-Trihydroxy-4',4',7,7-tetramethyl-2,7-dihydro-1H-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]Tetradecan]-13'-ene-2,8'-dione is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004231521492D          

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M  END

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M  END


  Mrv1533004231521492D          

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M  END
> <DATABASE_ID>
NP0329498

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1(C)C2CC34CCCN3C(=O)C2(NC4=O)C(O)C11C(=O)N(O)C2=C3C=CC(C)(C)OC3=CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C26H29N3O6/c1-22(2)10-8-13-15(35-22)7-6-14-17(13)29(34)20(32)25(14)18(30)26-16(23(25,3)4)12-24(19(31)27-26)9-5-11-28(24)21(26)33/h6-8,10,16,18,30,34H,5,9,11-12H2,1-4H3,(H,27,31)

> <INCHI_KEY>
FPTDDDJWQMOTMV-UHFFFAOYSA-N

> <FORMULA>
C26H29N3O6

> <MOLECULAR_WEIGHT>
479.533

> <EXACT_MASS>
479.205635666

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
50.21490349482341

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
1,6'-dihydroxy-4',4',7,7-tetramethyl-2,7-dihydro-1H-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecane]-2,8',13'-trione

> <ALOGPS_LOGP>
1.94

> <JCHEM_LOGP>
0.760630847666667

> <ALOGPS_LOGS>
-3.01

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.267882124773799

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.932835888944907

> <JCHEM_PKA_STRONGEST_BASIC>
-3.424327234593506

> <JCHEM_POLAR_SURFACE_AREA>
119.41

> <JCHEM_REFRACTIVITY>
124.61129999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.68e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1,6'-dihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecane]-2,8',13'-trione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  C   UNK     0      18.839   3.629   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      18.254   2.205   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      19.759   1.876   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      16.953   3.029   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      15.589   2.314   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      14.288   3.138   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.924   2.423   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      12.861   0.884   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      14.162   0.060   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      13.781  -1.432   0.000  0.00  0.00           N+0
HETATM   11  O   UNK     0      14.764  -2.617   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      12.244  -1.530   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      11.420  -2.831   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      11.675  -0.099   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.428  -1.051   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      10.572  -2.585   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       8.996  -0.334   0.000  0.00  0.00           C+0
HETATM   18  N   UNK     0       7.626   0.164   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0       8.069   1.499   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       9.453   2.175   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       6.688   1.990   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.313   2.785   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.033   1.885   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.637   0.438   0.000  0.00  0.00           C+0
HETATM   25  N   UNK     0       6.233   0.351   0.000  0.00  0.00           N+0
HETATM   26  C   UNK     0       7.373  -0.942   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       6.999  -2.436   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       8.291   2.613   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       9.445   1.315   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      11.043   1.334   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      11.150   2.870   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      12.398   2.067   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      15.526   0.775   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      16.827  -0.049   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      18.191   0.666   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4   35                                             
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   33                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   14                                                  
CONECT    9    8   10   33                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12    8   15   30                                             
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   26   29                                             
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   25   28                                             
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   21   26                                                  
CONECT   26   25   17   27                                                  
CONECT   27   26                                                            
CONECT   28   21   29                                                       
CONECT   29   28   17   30                                                  
CONECT   30   29   14   31   32                                             
CONECT   31   30                                                            
CONECT   32   30                                                            
CONECT   33    9    5   34                                                  
CONECT   34   33   35                                                       
CONECT   35   34    2                                                       
MASTER        0    0    0    0    0    0    0    0   35    0   82    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₂₉N₃O₆

Average Mass

479.5330 Da

Monoisotopic Mass

479.20564 Da

IUPAC Name

1,6'-dihydroxy-4',4',7,7-tetramethyl-2,7-dihydro-1H-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecane]-2,8',13'-trione

Traditional Name

1,6'-dihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecane]-2,8',13'-trione

CAS Registry Number

Not Available

SMILES

CC1(C)C2CC34CCCN3C(=O)C2(NC4=O)C(O)C11C(=O)N(O)C2=C3C=CC(C)(C)OC3=CC=C12

InChI Identifier

InChI=1S/C26H29N3O6/c1-22(2)10-8-13-15(35-22)7-6-14-17(13)29(34)20(32)25(14)18(30)26-16(23(25,3)4)12-24(19(31)27-26)9-5-11-28(24)21(26)33/h6-8,10,16,18,30,34H,5,9,11-12H2,1-4H3,(H,27,31)

InChI Key

FPTDDDJWQMOTMV-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Prostaglandins and related compounds

Alternative Parents

Substituents

Prostaglandin skeleton
Carbocyclic fatty acid
Ketone
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.94	ALOGPS
logP	0.76	ChemAxon
logS	-3	ALOGPS
pKa (Strongest Acidic)	7.93	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	119.41 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	124.61 m³·mol⁻¹	ChemAxon
Polarizability	50.21 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione (NP0329498)

MOL for NP0329498 (1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione)

3D MOL for NP0329498 (1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione)

3D SDF for NP0329498 (1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione)

3D-SDF for NP0329498 (1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione)

PDB for NP0329498 (1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione)

3D PDB for NP0329498 (1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione)

SMILES for NP0329498 (1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione)

INCHI for NP0329498 (1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione)

Structure for NP0329498 (1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione)

3D Structure for NP0329498 (1,6',13'-trihydroxy-4',4',7,7-tetramethyl-9',14'-diazaspiro[chromeno[5,6-b]pyrrole-3,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]tetradecan]-13'-ene-2,8'-dione)