NP-MRD: Showing NP-Card for [(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate (NP0329403)

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Record Information

Version

2.0

Created at

2022-09-12 13:44:56 UTC

Updated at

2022-09-12 13:44:56 UTC

NP-MRD ID

NP0329403

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate

Description

[(1S,5E,9R,10S)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]Undec-5-en-10-yl]methyl acetate belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. [(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate is found in Ozothamnus diosmifolius. It was first documented in 2022 (PMID: 36130844). Based on a literature review a significant number of articles have been published on [(1S,5E,9R,10S)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]Undec-5-en-10-yl]methyl acetate (PMID: 36130843) (PMID: 36130842) (PMID: 36130841) (PMID: 36130840).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309122215442D          

 19 20  0  0  1  0            999 V2000
    2.4366    0.8327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8491    0.1183    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6615    0.2615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3760   -0.1510    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0938   -0.9262    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3760   -1.7015    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1512   -1.9836    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6615   -2.1140    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8491   -1.9707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3188   -1.3387    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3188   -0.5137    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4938   -0.5137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4938   -1.3387    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6915   -1.5313    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3012   -2.1409    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8996   -2.7088    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7070   -3.5110    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3054   -4.0789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9160   -3.7453    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
  2 11  1  0  0  0  0
 11 12  1  6  0  0  0
 12 13  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0329403

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)OC[C@@]1(C)C[C@H]2[C@H]1CC\C(C)=C\CCC2=C

> <INCHI_IDENTIFIER>
InChI=1S/C17H26O2/c1-12-6-5-7-13(2)15-10-17(4,11-19-14(3)18)16(15)9-8-12/h6,15-16H,2,5,7-11H2,1,3-4H3/b12-6+/t15-,16-,17-/m1/s1

> <INCHI_KEY>
VKTLOEXWZVKMMV-QYMFUMRNSA-N

> <FORMULA>
C17H26O2

> <MOLECULAR_WEIGHT>
262.393

> <EXACT_MASS>
262.193280077

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
31.069976300888953

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[(1S,5E,9R,10S)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate

> <JCHEM_LOGP>
3.679663645333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-6.995030655947053

> <JCHEM_POLAR_SURFACE_AREA>
26.3

> <JCHEM_REFRACTIVITY>
78.37859999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
[(1S,5E,9R,10S)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       4.548   1.554   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.318   0.221   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.835   0.488   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.169  -0.282   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.642  -1.729   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.169  -3.176   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.616  -3.703   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.835  -3.946   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.318  -3.679   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.328  -2.499   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.328  -0.959   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.788  -0.959   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.788  -2.499   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.291  -2.858   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.429  -3.996   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.546  -5.056   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       3.186  -6.554   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.303  -7.614   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       1.710  -6.991   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   11                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   13                                                  
CONECT   11   10    2   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12   10   14   15                                             
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   40    0
END

View in JSmol

Synonyms

Value	Source
[(1S,5E,9R,10S)-6,10-Dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetic acid	Generator

Chemical Formula

C₁₇H₂₆O₂

Average Mass

262.3930 Da

Monoisotopic Mass

262.19328 Da

IUPAC Name

[(1S,5E,9R,10S)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate

Traditional Name

[(1S,5E,9R,10S)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)OC[C@@]1(C)C[C@H]2[C@H]1CC\C(C)=C\CCC2=C

InChI Identifier

InChI=1S/C17H26O2/c1-12-6-5-7-13(2)15-10-17(4,11-19-14(3)18)16(15)9-8-12/h6,15-16H,2,5,7-11H2,1,3-4H3/b12-6+/t15-,16-,17-/m1/s1

InChI Key

VKTLOEXWZVKMMV-QYMFUMRNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ozothamnus diosmifolius	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Caryophyllane sesquiterpenoid
Sesquiterpenoid
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.68	ChemAxon
pKa (Strongest Basic)	-7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.3 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	78.38 m³·mol⁻¹	ChemAxon
Polarizability	31.07 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162905708

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Cani I, Righini M, Cenni P, Foschi M: Teaching NeuroImage: Partially Reversible Widespread Leukoencephalopathy Associated With Atypical Hemolytic Uremic Syndrome. Neurology. 2022 Sep 21. pii: WNL.0000000000201378. doi: 10.1212/WNL.0000000000201378. [PubMed:36130844 ]
Sasaki R, Morimoto S, Ozawa F, Okano H, Yoshida M, Ishiura H, Tsuji S, Kuzuhara S, Kokubo Y: APOE Alleles With Tau and Abeta Pathology In Patients With Amyotrophic Lateral Sclerosis and Parkinsonism-Dementia Complex in the Kii Peninsula. Neurology. 2022 Sep 21. pii: WNL.0000000000201156. doi: 10.1212/WNL.0000000000201156. [PubMed:36130843 ]
Zhang Z, Wang M, Gill D, Liu X: Genetically Predicted Smoking and Alcohol Consumption and Functional Outcome After Ischemic Stroke. Neurology. 2022 Sep 21. pii: WNL.0000000000201291. doi: 10.1212/WNL.0000000000201291. [PubMed:36130842 ]
Khamis S, Mitakidou MR, Champion M, Goyal S, Jones RL, Siddiqui A, Sabanathan S, Hedderly T, Lin JP, Jungbluth H, Papandreou A: Clinical Reasoning: A Teenage Girl With Progressive Hyperkinetic Movements, Seizures, and Encephalopathy. Neurology. 2022 Sep 21. pii: WNL.0000000000201385. doi: 10.1212/WNL.0000000000201385. [PubMed:36130841 ]
Rosenberg A, Ohlund-Wistbacka U, Hall A, Bonnard A, Hagman G, Ryden M, Thunborg C, Wiggenraad F, Sandebring-Matton A, Solomon A, Kivipelto M: beta-Amyloid, Tau, Neurodegeneration Classification and Eligibility for Anti-amyloid Treatment in a Memory Clinic Population. Neurology. 2022 Sep 21. pii: WNL.0000000000201043. doi: 10.1212/WNL.0000000000201043. [PubMed:36130840 ]
LOTUS database [Link]

Showing NP-Card for [(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate (NP0329403)

MOL for NP0329403 ([(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate)

3D MOL for NP0329403 ([(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate)

3D SDF for NP0329403 ([(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate)

3D-SDF for NP0329403 ([(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate)

PDB for NP0329403 ([(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate)

3D PDB for NP0329403 ([(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate)

SMILES for NP0329403 ([(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate)

INCHI for NP0329403 ([(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate)

Structure for NP0329403 ([(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate)

3D Structure for NP0329403 ([(1s,5e,9r,10s)-6,10-dimethyl-2-methylidenebicyclo[7.2.0]undec-5-en-10-yl]methyl acetate)