NP-MRD: Showing NP-Card for (2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid (NP0329315)

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Record Information

Version

2.0

Created at

2022-09-12 13:35:45 UTC

Updated at

2022-09-12 13:35:45 UTC

NP-MRD ID

NP0329315

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid

Description

(2S)-4-[(2Z)-2-{[(1S)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-1,2,3,4-tetrahydropyridine-2,6-dicarboxylic acid belongs to the class of organic compounds known as arginine and derivatives. (2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid is found in Ullucus tuberosus. Arginine and derivatives are compounds containing arginine or a derivative thereof resulting from reaction of arginine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom (2S)-4-[(2Z)-2-{[(1S)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-1,2,3,4-tetrahydropyridine-2,6-dicarboxylic acid is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

Arginine-betaxanthin
  Mrv1652304022019352D          

 27 27  0  0  1  0            999 V2000
   13.7356  -11.5848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7356  -12.4097    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0210  -11.1723    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0210  -12.8223    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.3066  -11.5848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3066  -12.4097    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.5921  -12.8222    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5921  -13.6472    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.8775  -12.4097    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.4500  -12.8223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1645  -12.4099    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.4500  -13.6474    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.0310  -10.3771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4446   -9.8006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4446   -8.9060    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.2861   -8.2357    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   14.1631   -8.4366    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8433   -7.9698    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.2273   -9.2592    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.7071   -7.6635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9898   -8.0709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2782   -7.6534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5609   -8.0608    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.8493   -7.6433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1319   -8.0507    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.8552   -6.8183    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.6792  -11.9873    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  5  3  1  0  0  0  0
  6  4  1  0  0  0  0
  6  5  1  0  0  0  0
  8  7  2  0  0  0  0
  9  7  1  0  0  0  0
  6  7  1  6  0  0  0
 11 10  2  0  0  0  0
 12 10  1  0  0  0  0
  2 10  1  0  0  0  0
  3 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 18 17  2  0  0  0  0
 19 17  1  0  0  0  0
 16 17  1  1  0  0  0
 20 16  1  0  0  0  0
 21 20  1  0  0  0  0
 22 21  1  0  0  0  0
 23 22  1  0  0  0  0
  6 27  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
M  END

     RDKit          3D

 47 47  0  0  0  0  0  0  0  0999 V2000
    6.6657    3.3999   -1.5867 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2730    2.6049   -1.2838 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.8241    1.4452   -0.9768 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7479    0.4451   -0.5796 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4297    1.1884   -1.0397 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.8191    0.2964   -0.0658 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3313    0.1614   -0.3113 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7575   -0.7731    0.7275 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2448   -0.9462    0.5240 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6583    0.3295    0.6461 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5782    0.6253    0.4185 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4074   -0.4663    0.0047 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6941   -0.2531   -0.2509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5599   -1.3751   -0.6826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8605   -1.3774   -0.4804 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6943   -2.4708   -0.9030 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9278   -2.4187   -0.6839 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2191   -3.6017   -1.5493 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4356   -0.2639    0.1727 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6552    0.8713    0.6277 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.5061    2.0741    0.5677 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7186    2.0197    0.1662 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0629    3.3383    0.9367 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3634    1.0463   -0.1428 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8071   -1.9463    1.5146 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2463   -3.1222    1.5249 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1246   -1.5935    2.4798 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3410   -0.0865   -1.2484 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8452    0.2238    0.4330 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8581    1.6402   -1.7809 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2905   -0.6950   -0.1043 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9923    0.7116    0.9561 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1893   -0.1922   -1.3373 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8968    1.1847   -0.1683 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2850   -1.7411    0.6798 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9734   -0.3381    1.7220 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0734   -1.3777   -0.4832 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8440    1.6426    0.5624 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0632   -1.4829   -0.1224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0406   -2.2086   -1.1834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5070   -3.5977   -2.2428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4785   -0.2009    0.3677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3616    0.7120    1.7019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8272    3.9621    0.1540 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6786    1.4046   -1.1673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8290    1.8608    0.3141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1121   -0.6591    2.8249 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 24  1  0
 24 13  1  0
 13 12  2  0
 12 11  1  0
 11 10  2  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  1  0
  3  2  2  0
  9 25  1  0
 25 27  1  0
 25 26  2  0
 13 14  1  0
 14 15  2  0
 15 19  1  0
 15 16  1  0
 16 18  1  0
 16 17  2  0
 20 21  1  0
 21 23  1  0
 21 22  2  0
 19 20  1  0
 20 43  1  1
 24 45  1  0
 24 46  1  0
 12 39  1  0
 11 38  1  0
  9 37  1  6
  8 35  1  0
  8 36  1  0
  7 33  1  0
  7 34  1  0
  6 31  1  0
  6 32  1  0
  5 30  1  0
  4 28  1  0
  4 29  1  0
  2  1  1  0
 27 47  1  0
 14 40  1  0
 19 42  1  0
 18 41  1  0
 23 44  1  0
M  END

Arginine-betaxanthin
  Mrv1652304022019352D          

 27 27  0  0  1  0            999 V2000
   13.7356  -11.5848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7356  -12.4097    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0210  -11.1723    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0210  -12.8223    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.3066  -11.5848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3066  -12.4097    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.5921  -12.8222    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5921  -13.6472    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.8775  -12.4097    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.4500  -12.8223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1645  -12.4099    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.4500  -13.6474    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.0310  -10.3771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4446   -9.8006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4446   -8.9060    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.2861   -8.2357    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   14.1631   -8.4366    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8433   -7.9698    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.2273   -9.2592    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.7071   -7.6635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9898   -8.0709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2782   -7.6534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5609   -8.0608    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.8493   -7.6433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1319   -8.0507    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.8552   -6.8183    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.6792  -11.9873    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  5  3  1  0  0  0  0
  6  4  1  0  0  0  0
  6  5  1  0  0  0  0
  8  7  2  0  0  0  0
  9  7  1  0  0  0  0
  6  7  1  6  0  0  0
 11 10  2  0  0  0  0
 12 10  1  0  0  0  0
  2 10  1  0  0  0  0
  3 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 18 17  2  0  0  0  0
 19 17  1  0  0  0  0
 16 17  1  1  0  0  0
 20 16  1  0  0  0  0
 21 20  1  0  0  0  0
 22 21  1  0  0  0  0
 23 22  1  0  0  0  0
  6 27  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0329315

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]1(C\C(=C/C=N\[C@@H](CCCNC(N)=N)C(O)=O)C=C(N1)C(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H21N5O6/c16-15(17)19-4-1-2-9(12(21)22)18-5-3-8-6-10(13(23)24)20-11(7-8)14(25)26/h3,5-6,9,11,20H,1-2,4,7H2,(H,21,22)(H,23,24)(H,25,26)(H4,16,17,19)/b8-3-,18-5-/t9-,11-/m0/s1

> <INCHI_KEY>
YAQNIUGMDIKWBA-GOEHPVLMSA-N

> <FORMULA>
C15H21N5O6

> <MOLECULAR_WEIGHT>
367.362

> <EXACT_MASS>
367.149183416

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
47

> <JCHEM_AVERAGE_POLARIZABILITY>
36.07610106479839

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,4E)-4-[(2Z)-2-{[(1S)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-1,2,3,4-tetrahydropyridine-2,6-dicarboxylic acid

> <ALOGPS_LOGP>
-0.37

> <JCHEM_LOGP>
-6.155118815698319

> <ALOGPS_LOGS>
-3.49

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
3.3831803360065273

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.4032021882463028

> <JCHEM_PKA_STRONGEST_BASIC>
12.163512709099415

> <JCHEM_POLAR_SURFACE_AREA>
198.19

> <JCHEM_REFRACTIVITY>
101.7381

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.20e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,4E)-4-[(2Z)-2-{[(1S)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1H-pyridine-2,6-dicarboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-APR-20   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: Arginine-betaxanthin                              
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-APR-20         0                                  
HETATM    1  C   UNK     0      25.640 -21.625   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      25.640 -23.165   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      24.306 -20.855   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0      24.306 -23.935   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0      22.972 -21.625   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      22.972 -23.165   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      21.639 -23.935   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      21.639 -25.475   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      20.305 -23.165   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      26.973 -23.935   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      28.307 -23.165   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      26.973 -25.475   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      24.325 -19.371   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      23.230 -18.294   0.000  0.00  0.00           C+0
HETATM   15  N   UNK     0      23.230 -16.625   0.000  0.00  0.00           N+0
HETATM   16  C   UNK     0      24.801 -15.373   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      26.438 -15.748   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      27.707 -14.877   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0      26.558 -17.284   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      23.720 -14.305   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      22.381 -15.066   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      21.053 -14.286   0.000  0.00  0.00           C+0
HETATM   23  N   UNK     0      19.714 -15.047   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0      18.385 -14.267   0.000  0.00  0.00           C+0
HETATM   25  N   UNK     0      17.046 -15.028   0.000  0.00  0.00           N+0
HETATM   26  N   UNK     0      18.396 -12.727   0.000  0.00  0.00           N+0
HETATM   27  H   UNK     0      21.801 -22.376   0.000  0.00  0.00           H+0
CONECT    1    2    3                                                       
CONECT    2    1    4   10                                                  
CONECT    3    1    5   13                                                  
CONECT    4    2    6                                                       
CONECT    5    3    6                                                       
CONECT    6    4    5    7   27                                             
CONECT    7    8    9    6                                                  
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10   11   12    2                                                  
CONECT   11   10                                                            
CONECT   12   10                                                            
CONECT   13    3   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   20                                                  
CONECT   17   18   19   16                                                  
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20   16   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24                                                            
CONECT   27    6                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   54    0
END

View in JSmol

Synonyms

Value	Source
(2S)-4-[(2Z)-2-{[(1S)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-1,2,3,4-tetrahydropyridine-2,6-dicarboxylate	Generator

Chemical Formula

C₁₅H₂₁N₅O₆

Average Mass

367.3620 Da

Monoisotopic Mass

367.14918 Da

IUPAC Name

(2S,4E)-4-[(2Z)-2-{[(1S)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-1,2,3,4-tetrahydropyridine-2,6-dicarboxylic acid

Traditional Name

(2S,4E)-4-[(2Z)-2-{[(1S)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1H-pyridine-2,6-dicarboxylic acid

CAS Registry Number

Not Available

SMILES

[H][C@]1(C\C(=C/C=N\[C@@H](CCCNC(N)=N)C(O)=O)C=C(N1)C(O)=O)C(O)=O

InChI Identifier

InChI=1S/C15H21N5O6/c16-15(17)19-4-1-2-9(12(21)22)18-5-3-8-6-10(13(23)24)20-11(7-8)14(25)26/h3,5-6,9,11,20H,1-2,4,7H2,(H,21,22)(H,23,24)(H,25,26)(H4,16,17,19)/b8-3-,18-5-/t9-,11-/m0/s1

InChI Key

YAQNIUGMDIKWBA-GOEHPVLMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ullucus tuberosus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as arginine and derivatives. Arginine and derivatives are compounds containing arginine or a derivative thereof resulting from reaction of arginine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Arginine and derivatives

Alternative Parents

Substituents

Arginine or derivatives
Alpha-amino acid
L-alpha-amino acid
Tricarboxylic acid or derivatives
Tetrahydropyridine
Hydropyridine
Amino acid
Guanidine
Shiff base
Carboxylic acid
Secondary aliphatic amine
Enamine
Secondary amine
Azacycle
Aldimine
Carboximidamide
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Organoheterocyclic compound
Imine
Organonitrogen compound
Organooxygen compound
Amine
Carbonyl group
Organic oxide
Organic oxygen compound
Organic nitrogen compound
Hydrocarbon derivative
Organopnictogen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.37	ALOGPS
logP	-6.2	ChemAxon
logS	-3.5	ALOGPS
pKa (Strongest Acidic)	1.4	ChemAxon
pKa (Strongest Basic)	12.16	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	198.19 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	101.74 m³·mol⁻¹	ChemAxon
Polarizability	36.08 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid (NP0329315)

MOL for NP0329315 ((2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid)

3D MOL for NP0329315 ((2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid)

3D SDF for NP0329315 ((2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid)

3D-SDF for NP0329315 ((2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid)

PDB for NP0329315 ((2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid)

3D PDB for NP0329315 ((2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid)

SMILES for NP0329315 ((2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid)

INCHI for NP0329315 ((2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid)

Structure for NP0329315 ((2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid)

3D Structure for NP0329315 ((2s,4e)-4-[(2z)-2-{[(1s)-4-carbamimidamido-1-carboxybutyl]imino}ethylidene]-2,3-dihydro-1h-pyridine-2,6-dicarboxylic acid)