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Showing NP-Card for (1s,4s,5s)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene (NP0329224)

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Record Information
Version1.0
Created at2022-09-12 13:25:28 UTC
Updated at2022-09-12 13:25:28 UTC
NP-MRD IDNP0329224
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1s,4s,5s)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene
Description(1S,4S,5S)-4-methyl-1-(propan-2-yl)bicyclo[3.1.0]Hex-2-ene belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other. (1s,4s,5s)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene is found in Mosla chinensis and Pleodendron costaricense. It was first documented in 2022 (PMID: 36130844). Based on a literature review a significant number of articles have been published on (1S,4S,5S)-4-methyl-1-(propan-2-yl)bicyclo[3.1.0]Hex-2-ene (PMID: 36130843) (PMID: 36130842) (PMID: 36130841) (PMID: 36130840).
Structure
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MOL3D MOLSDFPDBSMILESInChI

MOL for NP0329224 ((1s,4s,5s)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene)


  Mrv1652309122215252D          

 10 11  0  0  1  0            999 V2000
    0.3019    1.1912    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1224    1.1050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6073    1.7724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4579    0.3513    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2425    0.6062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7275   -0.0612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2425   -0.7286    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4975   -1.5133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4579   -0.4737    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7434   -0.0612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  2  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  4  9  1  0  0  0  0
  9 10  1  6  0  0  0
  4 10  1  0  0  0  0
M  END
Download

3D MOL for NP0329224 ((1s,4s,5s)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene)

     RDKit          3D

 26 27  0  0  0  0  0  0  0  0999 V2000
   -2.0860    0.0266   -1.4002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7319   -0.3258    0.0216 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6589    0.3988    0.9428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2775   -0.0711    0.2901 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3977   -1.0598    1.1651 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6172   -1.3589    0.7652 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9435   -0.5988   -0.4608 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1059    0.3194   -0.1186 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6972    0.1538   -0.7773 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3279    1.2610    0.1536 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8895    1.0986   -1.5750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5420   -0.6382   -2.0846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1769   -0.1455   -1.5323 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9174   -1.4134    0.1484 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6772   -0.0135    1.9691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6894    0.2885    0.5338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4717    1.4837    1.0112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0566   -1.5050    2.0556 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3102   -2.0509    1.2332 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2653   -1.2813   -1.2837 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0410   -0.1496   -0.4690 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1973    0.4447    0.9788 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0166    1.2870   -0.6536 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3782    0.1901   -1.8434 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0803    1.5282    0.9364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2037    2.1316   -0.2368 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  4  2  1  6
  4 10  1  0
 10  9  1  0
  9  7  1  0
  7  8  1  0
  7  6  1  0
  6  5  2  0
  9  4  1  0
  5  4  1  0
  1 11  1  0
  1 12  1  0
  1 13  1  0
  2 14  1  0
  3 15  1  0
  3 16  1  0
  3 17  1  0
 10 25  1  0
 10 26  1  0
  9 24  1  6
  7 20  1  6
  8 21  1  0
  8 22  1  0
  8 23  1  0
  6 19  1  0
  5 18  1  0
M  END
Download

3D SDF for NP0329224 ((1s,4s,5s)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene)


  Mrv1652309122215252D          

 10 11  0  0  1  0            999 V2000
    0.3019    1.1912    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1224    1.1050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6073    1.7724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4579    0.3513    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2425    0.6062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7275   -0.0612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2425   -0.7286    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4975   -1.5133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4579   -0.4737    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7434   -0.0612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  2  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  4  9  1  0  0  0  0
  9 10  1  6  0  0  0
  4 10  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0329224

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@]12C[C@H]1[C@@H](C)C=C2

> <INCHI_IDENTIFIER>
InChI=1S/C10H16/c1-7(2)10-5-4-8(3)9(10)6-10/h4-5,7-9H,6H2,1-3H3/t8-,9-,10-/m0/s1

> <INCHI_KEY>
GJYKUZUTZNTBEC-GUBZILKMSA-N

> <FORMULA>
C10H16

> <MOLECULAR_WEIGHT>
136.238

> <EXACT_MASS>
136.125200515

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
26

> <JCHEM_AVERAGE_POLARIZABILITY>
17.16645399566579

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,4S,5S)-4-methyl-1-(propan-2-yl)bicyclo[3.1.0]hex-2-ene

> <JCHEM_LOGP>
2.845319271

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
44.9889

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4S,5S)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for NP0329224 ((1s,4s,5s)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene)

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PDB for NP0329224 ((1s,4s,5s)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene)
HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       0.563   2.224   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.095   2.063   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.000   3.308   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.721   0.656   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.186   1.132   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.091  -0.114   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.186  -1.360   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.662  -2.825   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.721  -0.884   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.388  -0.114   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    9   10                                             
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7    4   10                                                  
CONECT   10    9    4                                                       
MASTER        0    0    0    0    0    0    0    0   10    0   22    0
END

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3D PDB for NP0329224 ((1s,4s,5s)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene)
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SMILES for NP0329224 ((1s,4s,5s)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene)
CC(C)[C@]12C[C@H]1[C@@H](C)C=C2
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INCHI for NP0329224 ((1s,4s,5s)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene)
InChI=1S/C10H16/c1-7(2)10-5-4-8(3)9(10)6-10/h4-5,7-9H,6H2,1-3H3/t8-,9-,10-/m0/s1
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View in JSmol
SynonymsNot Available
Chemical FormulaC10H16
Average Mass136.2380 Da
Monoisotopic Mass136.12520 Da
IUPAC Name(1S,4S,5S)-4-methyl-1-(propan-2-yl)bicyclo[3.1.0]hex-2-ene
Traditional Name(1S,4S,5S)-1-isopropyl-4-methylbicyclo[3.1.0]hex-2-ene
CAS Registry NumberNot Available
SMILES
CC(C)[C@]12C[C@H]1[C@@H](C)C=C2
InChI Identifier
InChI=1S/C10H16/c1-7(2)10-5-4-8(3)9(10)6-10/h4-5,7-9H,6H2,1-3H3/t8-,9-,10-/m0/s1
InChI KeyGJYKUZUTZNTBEC-GUBZILKMSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Mosla chinensisLOTUS Database
Pleodendron costaricenseLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other.
KingdomOrganic compounds  
Super ClassLipids and lipid-like molecules  
ClassPrenol lipids  
Sub ClassMonoterpenoids  
Direct ParentBicyclic monoterpenoids  
Alternative Parents
Substituents
  • Bicyclic monoterpenoid
    • 

  • Thujane monoterpenoid
    • 

  • Polycyclic hydrocarbon
    • 

  • Cyclic olefin
    • 

  • Unsaturated aliphatic hydrocarbon
    • 

  • Unsaturated hydrocarbon
    • 

  • Olefin
    • 

  • Hydrocarbon
    • 

  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.85ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity44.99 m³·mol⁻¹ChemAxon
Polarizability17.17 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID74102204  
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound12444328  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Cani I, Righini M, Cenni P, Foschi M: Teaching NeuroImage: Partially Reversible Widespread Leukoencephalopathy Associated With Atypical Hemolytic Uremic Syndrome. Neurology. 2022 Sep 21. pii: WNL.0000000000201378. doi: 10.1212/WNL.0000000000201378. [PubMed:36130844  ] 
  2. Sasaki R, Morimoto S, Ozawa F, Okano H, Yoshida M, Ishiura H, Tsuji S, Kuzuhara S, Kokubo Y: APOE Alleles With Tau and Abeta Pathology In Patients With Amyotrophic Lateral Sclerosis and Parkinsonism-Dementia Complex in the Kii Peninsula. Neurology. 2022 Sep 21. pii: WNL.0000000000201156. doi: 10.1212/WNL.0000000000201156. [PubMed:36130843  ] 
  3. Zhang Z, Wang M, Gill D, Liu X: Genetically Predicted Smoking and Alcohol Consumption and Functional Outcome After Ischemic Stroke. Neurology. 2022 Sep 21. pii: WNL.0000000000201291. doi: 10.1212/WNL.0000000000201291. [PubMed:36130842  ] 
  4. Khamis S, Mitakidou MR, Champion M, Goyal S, Jones RL, Siddiqui A, Sabanathan S, Hedderly T, Lin JP, Jungbluth H, Papandreou A: Clinical Reasoning: A Teenage Girl With Progressive Hyperkinetic Movements, Seizures, and Encephalopathy. Neurology. 2022 Sep 21. pii: WNL.0000000000201385. doi: 10.1212/WNL.0000000000201385. [PubMed:36130841  ] 
  5. Rosenberg A, Ohlund-Wistbacka U, Hall A, Bonnard A, Hagman G, Ryden M, Thunborg C, Wiggenraad F, Sandebring-Matton A, Solomon A, Kivipelto M: beta-Amyloid, Tau, Neurodegeneration Classification and Eligibility for Anti-amyloid Treatment in a Memory Clinic Population. Neurology. 2022 Sep 21. pii: WNL.0000000000201043. doi: 10.1212/WNL.0000000000201043. [PubMed:36130840  ] 
  6. LOTUS database [Link]