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Record Information
Version2.0
Created at2022-09-12 13:11:50 UTC
Updated at2022-09-12 13:11:51 UTC
NP-MRD IDNP0329116
Secondary Accession NumbersNone
Natural Product Identification
Common Name(-)-cubebol
Description(-)-Cubebol, also known as cubeb camphor, belongs to the class of organic compounds known as sesquiterpenoids. (-)-cubebol is found in Abies sibirica, Acritopappus confertus, Ajuga chamaepitys, Cryptomeria japonica, Ekimia bornmuelleri, Peperomia circinnata, Picea glehnii, Picea koraiensis, Pinus densiflora, Piper aduncum, Taonia atomaria, Teucrium leucocladum, Teucrium sandrasicum and Toona ciliata. (-)-cubebol was first documented in 2009 (PMID: 19691071). These are terpenes with three consecutive isoprene units (-)-cubebol is an extremely weak basic (essentially neutral) compound (based on its pKa) (PMID: 20419721) (PMID: 20063852).
Structure
Thumb
Synonyms
ValueSource
(-)-(1R,4S,5R,6R,7S,10R)-7-Isopropyl-4,10-dimethyl-tricyclo[4.4.0.0(1,5)]decan-4-olChEBI
(1R,4S,5R,6R,7S,10R)-7-Isopropyl-4,10-dimethyl-tricyclo[4.4.0.0(1,5)]decan-4-olChEBI
Cubeb camphorChEBI
CubebolChEBI
Chemical FormulaC15H26O
Average Mass222.3720 Da
Monoisotopic Mass222.19837 Da
IUPAC Name(1R,4S,5R,6R,7S,10R)-4,10-dimethyl-7-(propan-2-yl)tricyclo[4.4.0.0¹,⁵]decan-4-ol
Traditional Name(-)-cubebol
CAS Registry NumberNot Available
SMILES
[H][C@@]12[C@]3([H])[C@]1(CC[C@]3(C)O)[C@]([H])(C)CC[C@@]2([H])C(C)C
InChI Identifier
InChI=1S/C15H26O/c1-9(2)11-6-5-10(3)15-8-7-14(4,16)13(15)12(11)15/h9-13,16H,5-8H2,1-4H3/t10-,11+,12-,13+,14+,15-/m1/s1
InChI KeyKONGRWVLXLWGDV-BYGOPZEFSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Abies sibiricaLOTUS Database
Acritopappus confertusLOTUS Database
Ajuga chamaepitysLOTUS Database
Cryptomeria japonicaLOTUS Database
Ekimia bornmuelleriLOTUS Database
Peperomia circinnataLOTUS Database
Picea glehniiLOTUS Database
Picea koraiensisLOTUS Database
Pinus densifloraLOTUS Database
Piper aduncumLOTUS Database
Taonia atomariaLOTUS Database
Teucrium leucocladumLOTUS Database
Teucrium sandrasicumLOTUS Database
Toona ciliataLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentSesquiterpenoids
Alternative Parents
Substituents
  • Cubebane sesquiterpenoid
  • Sesquiterpenoid
  • Tertiary alcohol
  • Cyclic alcohol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Alcohol
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.93ALOGPS
logP3.18ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)19.39ChemAxon
pKa (Strongest Basic)-0.88ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity66.6 m³·mol⁻¹ChemAxon
Polarizability27.45 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11276107
PDB IDNot Available
ChEBI ID63446
Good Scents IDNot Available
References
General References
  1. Lopez-Gallego F, Agger SA, Abate-Pella D, Distefano MD, Schmidt-Dannert C: Sesquiterpene synthases Cop4 and Cop6 from Coprinus cinereus: catalytic promiscuity and cyclization of farnesyl pyrophosphate geometric isomers. Chembiochem. 2010 May 17;11(8):1093-106. doi: 10.1002/cbic.200900671. [PubMed:20419721 ]
  2. Hodgson DM, Salik S, Fox DJ: Stereocontrolled syntheses of (-)-cubebol and (-)-10-epicubebol involving intramolecular cyclopropanation of alpha-lithiated epoxides. J Org Chem. 2010 Apr 2;75(7):2157-68. doi: 10.1021/jo9022974. [PubMed:20063852 ]
  3. Fehr C, Winter B, Magpantay I: Synthesis of (-)-cubebol by face-selective platinum-, gold-, or copper-catalyzed cycloisomerization: evidence of chirality transfer and mechanistic insights. Chemistry. 2009 Sep 28;15(38):9773-84. doi: 10.1002/chem.200901292. [PubMed:19691071 ]
  4. LOTUS database [Link]