NP-MRD: Showing NP-Card for (2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid (NP0328733)

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Record Information

Version

2.0

Created at

2022-09-12 12:28:59 UTC

Updated at

2022-09-12 12:28:59 UTC

NP-MRD ID

NP0328733

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid

Description

(-)-Ganotheaecolumol B belongs to the class of organic compounds known as chromones. Chromones are compounds containing a benzopyran-4-one moiety. It was first documented in 2021 (PMID: 33982482). Based on a literature review a significant number of articles have been published on (-)-ganotheaecolumol B (PMID: 36130844) (PMID: 36130843) (PMID: 36130842) (PMID: 36130841) (PMID: 36130840) (PMID: 36130836).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122214292D          

 27 28  0  0  1  0            999 V2000
   -4.4765    2.5798    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6641    2.4365    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3819    1.6613    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5694    1.5180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2873    0.7428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4748    0.5995    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9445    1.2315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1926   -0.1757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3802   -0.3190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0980   -1.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4323   -2.0127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9626   -2.6447    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3802   -2.1560    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1338    3.0685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4159    3.8438    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 11 10  1  6  0  0  0
 11 12  1  1  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 11 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
 22 23  1  0  0  0  0
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 18 24  1  0  0  0  0
 24 25  1  0  0  0  0
 11 25  1  0  0  0  0
  2 26  1  0  0  0  0
 26 27  1  0  0  0  0
M  END

     RDKit          3D

 53 54  0  0  0  0  0  0  0  0999 V2000
   -7.5648    0.1642    0.3332 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1645   -0.2965   -0.0493 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1385    0.0571    0.6781 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7430   -0.3216    0.4153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9646    0.9591    0.1863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5455    0.7399   -0.0901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1233   -0.0628   -1.2625 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6399    1.2682    0.7206 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8246    1.0874    0.5025 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3815    0.4005    1.7095 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748    0.1617    1.6003 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2970   -0.4867    2.8662 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2126    0.0792    3.9837 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8101   -1.7727    2.8396 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5454    1.5040    1.4488 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1245    1.7159    0.0973 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2186    2.8614   -0.4255 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6102    0.5847   -0.6789 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5852    0.6937   -1.6482 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0369   -0.3833   -2.3763 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0116   -0.2948   -3.3503 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4842   -1.6153   -2.1162 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4962   -1.7579   -1.1419 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0579   -0.6545   -0.4211 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0952   -0.7226    0.5456 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0258   -1.1267   -1.2417 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7860   -2.3057   -1.0322 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1240    0.3314   -0.5933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4121    1.1524    0.8214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0235   -0.5362    1.0317 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3588    0.6907    1.5564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5590   -1.0794   -0.3294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2990   -0.7444    1.3764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4134    1.4685   -0.6909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1006    1.5975    1.0813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9831   -0.2889   -1.9250 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3828    0.4688   -1.8978 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7153   -1.0391   -0.9410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9897    1.8484    1.5656 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0489    0.6004   -0.4513 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2518    2.1306    0.4332 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8971   -0.5642    1.8692 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2012    1.0535    2.5861 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1420   -2.1605    1.9533 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3837    1.5414    2.1753 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8713    2.3417    1.7191 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9951    1.6766   -1.8243 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0134   -0.4094   -3.1299 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7792   -2.5142   -2.6400 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0527   -2.7367   -0.9309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4648   -0.6065   -2.1397 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0411   -1.4576   -1.5154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7400   -2.1480   -1.2529 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2 26  1  0
 26 27  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 20 22  2  0
 22 23  1  0
 23 24  2  0
 24 25  1  0
 11 12  1  1
 12 14  1  0
 12 13  2  0
 25 11  1  0
 24 18  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
 26 51  1  0
 26 52  1  0
 27 53  1  0
  3 31  1  0
  4 32  1  0
  4 33  1  0
  5 34  1  0
  5 35  1  0
  7 36  1  0
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  9 40  1  0
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 10 42  1  0
 10 43  1  0
 15 45  1  0
 15 46  1  0
 19 47  1  0
 21 48  1  0
 22 49  1  0
 23 50  1  0
 14 44  1  0
M  END


  Mrv1652309122214292D          

 27 28  0  0  1  0            999 V2000
   -4.4765    2.5798    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6641    2.4365    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3819    1.6613    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5694    1.5180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2873    0.7428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4748    0.5995    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9445    1.2315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1926   -0.1757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3802   -0.3190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0980   -1.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4323   -2.0127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9626   -2.6447    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3802   -2.1560    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1338    3.0685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4159    3.8438    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 11 10  1  6  0  0  0
 11 12  1  1  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
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 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 18 24  1  0  0  0  0
 24 25  1  0  0  0  0
 11 25  1  0  0  0  0
  2 26  1  0  0  0  0
 26 27  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0328733

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C(CO)=C\CC\C(C)=C\CC[C@@]1(CC(=O)C2=CC(O)=CC=C2O1)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C21H26O6/c1-14(5-3-6-15(2)13-22)7-4-10-21(20(25)26)12-18(24)17-11-16(23)8-9-19(17)27-21/h6-9,11,22-23H,3-5,10,12-13H2,1-2H3,(H,25,26)/b14-7+,15-6-/t21-/m1/s1

> <INCHI_KEY>
VLXRBLIWOFMVDW-NKYXGXTLSA-N

> <FORMULA>
C21H26O6

> <MOLECULAR_WEIGHT>
374.433

> <EXACT_MASS>
374.172938557

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
40.35439792823403

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R)-6-hydroxy-2-[(3E,7Z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3,4-dihydro-2H-1-benzopyran-2-carboxylic acid

> <JCHEM_LOGP>
3.247315111666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
9.371973710064099

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.4694953517520215

> <JCHEM_PKA_STRONGEST_BASIC>
-2.0797068162575387

> <JCHEM_POLAR_SURFACE_AREA>
104.06

> <JCHEM_REFRACTIVITY>
102.89129999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-6-hydroxy-2-[(3E,7Z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3H-1-benzopyran-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0      -8.356   4.816   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -6.840   4.548   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -6.313   3.101   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.796   2.834   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -4.270   1.387   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.753   1.119   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.763   2.299   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.226  -0.328   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.710  -0.595   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.183  -2.043   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.807  -3.757   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       1.797  -4.937   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      -0.710  -4.025   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       8.002  -0.000   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -5.850   5.728   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -6.376   7.175   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   26                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   15   25                                             
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   11   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   24                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   18   25                                                  
CONECT   25   24   11                                                       
CONECT   26    2   27                                                       
CONECT   27   26                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   56    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₆O₆

Average Mass

374.4330 Da

Monoisotopic Mass

374.17294 Da

IUPAC Name

(2R)-6-hydroxy-2-[(3E,7Z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3,4-dihydro-2H-1-benzopyran-2-carboxylic acid

Traditional Name

(2R)-6-hydroxy-2-[(3E,7Z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3H-1-benzopyran-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

C\C(CO)=C\CC\C(C)=C\CC[C@@]1(CC(=O)C2=CC(O)=CC=C2O1)C(O)=O

InChI Identifier

InChI=1S/C21H26O6/c1-14(5-3-6-15(2)13-22)7-4-10-21(20(25)26)12-18(24)17-11-16(23)8-9-19(17)27-21/h6-9,11,22-23H,3-5,10,12-13H2,1-2H3,(H,25,26)/b14-7+,15-6-/t21-/m1/s1

InChI Key

VLXRBLIWOFMVDW-NKYXGXTLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as chromones. Chromones are compounds containing a benzopyran-4-one moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Chromones

Alternative Parents

Substituents

Chromone
Monoterpenoid
Bicyclic monoterpenoid
Aromatic monoterpenoid
Medium-chain hydroxy acid
Fatty alcohol
Aryl alkyl ketone
Aryl ketone
Medium-chain fatty acid
1-hydroxy-2-unsubstituted benzenoid
Hydroxy fatty acid
Heterocyclic fatty acid
Branched fatty acid
Alkyl aryl ether
Fatty acyl
Benzenoid
Ketone
Oxacycle
Monocarboxylic acid or derivatives
Ether
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.25	ChemAxon
pKa (Strongest Acidic)	3.47	ChemAxon
pKa (Strongest Basic)	-2.1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	104.06 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	102.89 m³·mol⁻¹	ChemAxon
Polarizability	40.35 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78441723

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139590277

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Zhang TT, Guo JC, Ma QY, Kong FD, Zhou LM, Xie QY, Dai HF, Yu ZF, Zhao YX: [Study on chemical constituents from fruiting bodies of Ganoderma calidophilum]. Zhongguo Zhong Yao Za Zhi. 2021 Apr;46(7):1783-1789. doi: 10.19540/j.cnki.cjcmm.20201223.602. [PubMed:33982482 ]
Cani I, Righini M, Cenni P, Foschi M: Teaching NeuroImage: Partially Reversible Widespread Leukoencephalopathy Associated With Atypical Hemolytic Uremic Syndrome. Neurology. 2022 Sep 21. pii: WNL.0000000000201378. doi: 10.1212/WNL.0000000000201378. [PubMed:36130844 ]
Sasaki R, Morimoto S, Ozawa F, Okano H, Yoshida M, Ishiura H, Tsuji S, Kuzuhara S, Kokubo Y: APOE Alleles With Tau and Abeta Pathology In Patients With Amyotrophic Lateral Sclerosis and Parkinsonism-Dementia Complex in the Kii Peninsula. Neurology. 2022 Sep 21. pii: WNL.0000000000201156. doi: 10.1212/WNL.0000000000201156. [PubMed:36130843 ]
Zhang Z, Wang M, Gill D, Liu X: Genetically Predicted Smoking and Alcohol Consumption and Functional Outcome After Ischemic Stroke. Neurology. 2022 Sep 21. pii: WNL.0000000000201291. doi: 10.1212/WNL.0000000000201291. [PubMed:36130842 ]
Khamis S, Mitakidou MR, Champion M, Goyal S, Jones RL, Siddiqui A, Sabanathan S, Hedderly T, Lin JP, Jungbluth H, Papandreou A: Clinical Reasoning: A Teenage Girl With Progressive Hyperkinetic Movements, Seizures, and Encephalopathy. Neurology. 2022 Sep 21. pii: WNL.0000000000201385. doi: 10.1212/WNL.0000000000201385. [PubMed:36130841 ]
Rosenberg A, Ohlund-Wistbacka U, Hall A, Bonnard A, Hagman G, Ryden M, Thunborg C, Wiggenraad F, Sandebring-Matton A, Solomon A, Kivipelto M: beta-Amyloid, Tau, Neurodegeneration Classification and Eligibility for Anti-amyloid Treatment in a Memory Clinic Population. Neurology. 2022 Sep 21. pii: WNL.0000000000201043. doi: 10.1212/WNL.0000000000201043. [PubMed:36130840 ]
Yu H, Cai G, Wu J, Li Q: Clinical Phenotypic Variability and Significance of Pneumolabyrinth After Tympanum-Penetrating Injury. Ear Nose Throat J. 2022 Sep 21:1455613221128132. doi: 10.1177/01455613221128132. [PubMed:36130836 ]
Silverman A, Beres S: Child Neurology: Horner Syndrome in an Otherwise Well-Appearing Infant. Neurology. 2022 Sep 21. pii: WNL.0000000000201377. doi: 10.1212/WNL.0000000000201377. [PubMed:36130839 ]
Harada Y, Wang SH, Juel VC: Clinical Reasoning: A 36-Year-Old Man With Asymmetric Muscle Weakness. Neurology. 2022 Sep 21. pii: WNL.0000000000201379. doi: 10.1212/WNL.0000000000201379. [PubMed:36130838 ]
Guest O, Memon AA, Chukweubuka A, Zaheer M, Siddiqi N: Robotic low anterior resection for locally advanced rectal cancer - A video vignette. Colorectal Dis. 2022 Sep 21. doi: 10.1111/codi.16345. [PubMed:36130837 ]
LOTUS database [Link]

Showing NP-Card for (2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid (NP0328733)

MOL for NP0328733 ((2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid)

3D MOL for NP0328733 ((2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid)

3D SDF for NP0328733 ((2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid)

3D-SDF for NP0328733 ((2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid)

PDB for NP0328733 ((2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid)

3D PDB for NP0328733 ((2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid)

SMILES for NP0328733 ((2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid)

INCHI for NP0328733 ((2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid)

Structure for NP0328733 ((2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid)

3D Structure for NP0328733 ((2r)-6-hydroxy-2-[(3e,7z)-9-hydroxy-4,8-dimethylnona-3,7-dien-1-yl]-4-oxo-3h-1-benzopyran-2-carboxylic acid)