NP-MRD: Showing NP-Card for n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid (NP0328552)

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Record Information

Version

2.0

Created at

2022-09-12 12:07:41 UTC

Updated at

2022-09-12 12:07:41 UTC

NP-MRD ID

NP0328552

Secondary Accession Numbers

None

Natural Product Identification

Common Name

n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid

Description

N-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2S)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom. Based on a literature review very few articles have been published on N-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2S)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122214072D          

 38 39  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309122214072D          

 38 39  0  0  1  0            999 V2000
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    2.7284    1.4036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7284    2.2286    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1574    1.4036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8718    0.9911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5863    1.4036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3008    0.9911    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.0152    1.4036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7297    0.9911    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.0152    2.2286    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  4  0  0  0
  6  8  2  0  0  0  0
  9  8  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 11 17  1  0  0  0  0
  9 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 20 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  2  0  0  0  0
 28 29  1  4  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 29 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 36 38  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0328552

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCC(O)=N[C@@H](CC1=CC=C(O)C=C1)C(=O)N1CC(C)CC1C(O)=NC(CCCNC(N)=N)C=O

> <INCHI_IDENTIFIER>
InChI=1S/C27H42N6O5/c1-3-4-5-8-24(36)32-22(15-19-9-11-21(35)12-10-19)26(38)33-16-18(2)14-23(33)25(37)31-20(17-34)7-6-13-30-27(28)29/h9-12,17-18,20,22-23,35H,3-8,13-16H2,1-2H3,(H,31,37)(H,32,36)(H4,28,29,30)/t18?,20?,22-,23?/m0/s1

> <INCHI_KEY>
ULFMNSXBTYDMFI-UGWHRVMUSA-N

> <FORMULA>
C27H42N6O5

> <MOLECULAR_WEIGHT>
530.67

> <EXACT_MASS>
530.321668476

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
80

> <JCHEM_AVERAGE_POLARIZABILITY>
57.59443244305959

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
N-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2S)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid

> <JCHEM_LOGP>
0.9689144422739334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
5.854223416616918

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.523478321416977

> <JCHEM_PKA_STRONGEST_BASIC>
12.046829171812503

> <JCHEM_POLAR_SURFACE_AREA>
184.69000000000003

> <JCHEM_REFRACTIVITY>
155.2702

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
N-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2S)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.953  -1.556   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.488  -2.032   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.168  -3.538   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.296  -4.014   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.617  -5.521   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.081  -5.997   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.401  -7.503   0.000  0.00  0.00           O+0
HETATM    8  N   UNK     0       4.226  -4.966   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       3.905  -3.460   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.441  -2.984   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.121  -1.478   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.656  -1.002   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.336   0.505   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.480   1.535   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       1.160   3.042   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       2.945   1.059   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.265  -0.447   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.050  -2.429   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.730  -0.923   0.000  0.00  0.00           O+0
HETATM   20  N   UNK     0       6.515  -2.905   0.000  0.00  0.00           N+0
HETATM   21  C   UNK     0       6.990  -4.370   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.530  -4.370   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.436  -5.616   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.006  -2.905   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.760  -2.000   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.760  -0.460   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       9.094   0.310   0.000  0.00  0.00           O+0
HETATM   28  N   UNK     0       6.427   0.310   0.000  0.00  0.00           N+0
HETATM   29  C   UNK     0       6.427   1.850   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.093   2.620   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       5.093   4.160   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       7.760   2.620   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       9.094   1.850   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      10.428   2.620   0.000  0.00  0.00           C+0
HETATM   35  N   UNK     0      11.761   1.850   0.000  0.00  0.00           N+0
HETATM   36  C   UNK     0      13.095   2.620   0.000  0.00  0.00           C+0
HETATM   37  N   UNK     0      14.429   1.850   0.000  0.00  0.00           N+0
HETATM   38  N   UNK     0      13.095   4.160   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   18                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   11                                                       
CONECT   18    9   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   25                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   20   26                                                  
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30   32                                                  
CONECT   30   29   31                                                       
CONECT   31   30                                                            
CONECT   32   29   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36                                                            
MASTER        0    0    0    0    0    0    0    0   38    0   78    0
END

View in JSmol

Synonyms

Value	Source
N-(5-Carbamimidamido-1-oxopentan-2-yl)-1-[(2S)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidate	Generator

Chemical Formula

C₂₇H₄₂N₆O₅

Average Mass

530.6700 Da

Monoisotopic Mass

530.32167 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CCCCCC(O)=N[C@@H](CC1=CC=C(O)C=C1)C(=O)N1CC(C)CC1C(O)=NC(CCCNC(N)=N)C=O

InChI Identifier

InChI=1S/C27H42N6O5/c1-3-4-5-8-24(36)32-22(15-19-9-11-21(35)12-10-19)26(38)33-16-18(2)14-23(33)25(37)31-20(17-34)7-6-13-30-27(28)29/h9-12,17-18,20,22-23,35H,3-8,13-16H2,1-2H3,(H,31,37)(H,32,36)(H4,28,29,30)/t18?,20?,22-,23?/m0/s1

InChI Key

ULFMNSXBTYDMFI-UGWHRVMUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

N-acyl-alpha amino acids and derivatives

Alternative Parents

Substituents

N-acyl-alpha amino acid or derivatives
Alpha-amino acid amide
Amphetamine or derivatives
N-acylpyrrolidine
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
Monocyclic benzene moiety
Tertiary carboxylic acid amide
Pyrrolidine
Guanidine
Carboxamide group
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carboximidamide
Carboximidic acid derivative
Carboximidic acid
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Imine
Carbonyl group
Aldehyde
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163194732

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid (NP0328552)

MOL for NP0328552 (n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid)

3D MOL for NP0328552 (n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid)

3D SDF for NP0328552 (n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid)

3D-SDF for NP0328552 (n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid)

PDB for NP0328552 (n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid)

3D PDB for NP0328552 (n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid)

SMILES for NP0328552 (n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid)

INCHI for NP0328552 (n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid)

Structure for NP0328552 (n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid)

3D Structure for NP0328552 (n-(5-carbamimidamido-1-oxopentan-2-yl)-1-[(2s)-2-[(1-hydroxyhexylidene)amino]-3-(4-hydroxyphenyl)propanoyl]-4-methylpyrrolidine-2-carboximidic acid)