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Showing NP-Card for (5r)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one (NP0328379)

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Record Information
Version1.0
Created at2022-09-12 11:48:02 UTC
Updated at2022-09-12 11:48:03 UTC
NP-MRD IDNP0328379
Secondary Accession NumbersNone
Natural Product Identification
Common Name(5r)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one
Description (5r)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one is found in Daldinia concentrica.
Structure
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MOL3D MOLSDFPDBSMILESInChI

MOL for NP0328379 ((5r)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one)


  Mrv1652309122213482D          

 14 14  0  0  1  0            999 V2000
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
  6 13  1  0  0  0  0
 13 14  2  0  0  0  0
M  END
Download

3D MOL for NP0328379 ((5r)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one)

     RDKit          3D

 28 28  0  0  0  0  0  0  0  0999 V2000
   -4.0715    0.4138   -0.0510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6665    0.2148   -0.5788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0619   -1.0488   -0.0103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7103   -1.3084   -0.4909 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6005   -2.1731   -1.4274 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5082   -0.7066   -0.0370 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7077   -1.0051   -0.5263 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8237   -1.9505   -1.5399 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9427   -0.3753   -0.0395 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8178    0.8703    0.7328 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5762    1.8622    0.0883 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4425    1.4329    0.8962 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4798    0.3147    1.0189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3342    0.2324    1.9825 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1848    1.3466    0.5306 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8316    0.3975   -0.8777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3232   -0.4287    0.6495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7034    0.2608   -1.6648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0589    1.0622   -0.1229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7505   -1.8783   -0.2900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0669   -0.9821    1.0994 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7926   -2.9329   -1.2272 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5030   -1.1096    0.6272 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6150   -0.2230   -0.9272 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2683    0.8059    1.7664 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2416    2.7668    0.3525 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4192    2.0863    1.8070 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2260    2.0550   -0.0161 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  2  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  2  0
 13  6  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  2 19  1  0
  3 20  1  0
  3 21  1  0
  8 22  1  0
  9 23  1  0
  9 24  1  0
 10 25  1  1
 11 26  1  0
 12 27  1  0
 12 28  1  0
M  END
Download

3D SDF for NP0328379 ((5r)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one)


  Mrv1652309122213482D          

 14 14  0  0  1  0            999 V2000
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
  6 13  1  0  0  0  0
 13 14  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0328379

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCC(=O)C1=C(O)C[C@@H](O)CC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C10H14O4/c1-2-3-7(12)10-8(13)4-6(11)5-9(10)14/h6,11,13H,2-5H2,1H3/t6-/m1/s1

> <INCHI_KEY>
AYPZPAWTWLZVCJ-ZCFIWIBFSA-N

> <FORMULA>
C10H14O4

> <MOLECULAR_WEIGHT>
198.218

> <EXACT_MASS>
198.089208931

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
28

> <JCHEM_AVERAGE_POLARIZABILITY>
20.27152565713823

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5R)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one

> <JCHEM_LOGP>
0.4176314453333335

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
15.117904374654533

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.4671209301262875

> <JCHEM_PKA_STRONGEST_BASIC>
-2.830832019514032

> <JCHEM_POLAR_SURFACE_AREA>
74.6

> <JCHEM_REFRACTIVITY>
51.7122

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(5R)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one

> <JCHEM_VEBER_RULE>
0

$$$$
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3D-SDF for NP0328379 ((5r)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one)

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PDB for NP0328379 ((5r)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one)
HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.334   6.930   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       2.667   4.620   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   13                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12    6   14                                                  
CONECT   14   13                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   28    0
END

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3D PDB for NP0328379 ((5r)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one)
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SMILES for NP0328379 ((5r)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one)
CCCC(=O)C1=C(O)C[C@@H](O)CC1=O
Download
INCHI for NP0328379 ((5r)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one)
InChI=1S/C10H14O4/c1-2-3-7(12)10-8(13)4-6(11)5-9(10)14/h6,11,13H,2-5H2,1H3/t6-/m1/s1
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View in JSmol
SynonymsNot Available
Chemical FormulaC10H14O4
Average Mass198.2180 Da
Monoisotopic Mass198.08921 Da
IUPAC Name(5R)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one
Traditional Name(5R)-2-butanoyl-3,5-dihydroxycyclohex-2-en-1-one
CAS Registry NumberNot Available
SMILES
CCCC(=O)C1=C(O)C[C@@H](O)CC1=O
InChI Identifier
InChI=1S/C10H14O4/c1-2-3-7(12)10-8(13)4-6(11)5-9(10)14/h6,11,13H,2-5H2,1H3/t6-/m1/s1
InChI KeyAYPZPAWTWLZVCJ-ZCFIWIBFSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Daldinia concentricaLOTUS Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.42ChemAxon
pKa (Strongest Acidic)4.47ChemAxon
pKa (Strongest Basic)-2.8ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area74.6 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity51.71 m³·mol⁻¹ChemAxon
Polarizability20.27 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
External LinksNot Available
References
General References
  1. LOTUS database [Link]