NP-MRD: Showing NP-Card for (1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one (NP0327966)

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Record Information

Version

2.0

Created at

2022-09-12 11:00:46 UTC

Updated at

2022-09-12 11:00:47 UTC

NP-MRD ID

NP0327966

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one

Description

Aruncide C belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. (1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one is found in Aruncus dioicus. It was first documented in 2011 (PMID: 21546250). Based on a literature review very few articles have been published on aruncide C (PMID: 27979172).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122213002D          

 25 27  0  0  1  0            999 V2000
    2.5158    3.8385    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2608    3.0538    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4539    2.8823    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8129    2.4407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5579    1.6561    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0428    0.9887    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5579    0.3212    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8129   -0.4634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6198   -0.6349    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8748   -1.4195    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6817   -1.5911    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9367   -2.3757    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7437   -2.5472    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2957   -1.9341    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3847   -2.9888    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6396   -3.7734    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5777   -2.8172    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0256   -3.4303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3227   -2.0326    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5158   -1.8611    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7733    0.5762    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9483    0.5762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3649   -0.0072    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9483    1.4012    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7733    1.4012    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
 10  9  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 10 19  1  0  0  0  0
 19 20  1  1  0  0  0
  7 21  1  0  0  0  0
 21 22  1  6  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 25 24  1  6  0  0  0
 21 25  1  0  0  0  0
  5 25  1  0  0  0  0
M  END

     RDKit          3D

 49 51  0  0  0  0  0  0  0  0999 V2000
    6.8957    0.2136    0.4309 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3973    0.2628    0.3388 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7687    1.5711    0.6017 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7039   -0.8016    0.0405 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2531   -0.8815   -0.0785 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5541   -0.4023    1.0542 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2330   -0.7567    0.6086 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2373   -0.3727    1.6413 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0338   -0.6557    1.4967 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9044   -0.2654    0.5891 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9355    0.5723    1.1357 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6941    0.9647    0.0412 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.4567    2.2420    0.3039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1934    2.5923   -0.8066 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7128   -0.1119   -0.3300 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7347   -0.2976   -1.7020 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1319   -1.4043    0.2759 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2897   -1.3133    1.6333 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6525   -1.3583   -0.1449 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7113   -1.0617   -1.5122 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1425   -0.0909   -0.7218 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0265   -0.9805   -1.8727 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1570   -1.7701   -2.3055 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2780   -0.6307   -2.3459 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6357   -0.0284   -1.1455 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3389    1.1880    0.1850 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1135    0.0053    1.5101 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3152   -0.5829   -0.2022 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3647    2.1309    1.3901 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7529    1.5490    0.9897 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8614    2.2011   -0.3217 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2626   -1.7237   -0.1383 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9019   -1.9313   -0.2267 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3051   -1.8518    0.4375 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6917   -0.6696    2.6311 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3280    0.7742    1.7139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4502    0.4022   -0.1624 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0321    1.1254   -0.8288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1815    2.0827    1.1389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7625    3.0249    0.6075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6693    3.0214   -1.5126 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6961    0.1091    0.1048 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3372   -1.0226   -1.9327 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5904   -2.2654   -0.2067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8648   -0.5630    1.9260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1989   -2.3454   -0.0540 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9596   -1.8282   -2.0538 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6808    0.9155   -0.7791 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9940    1.0193   -1.2108 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 12 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
  7 21  1  0
 21 25  1  0
 25 24  1  0
 24 22  1  0
 22 23  2  0
 25  5  1  0
 19 10  1  0
 22 21  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  3 29  1  0
  3 30  1  0
  3 31  1  0
  4 32  1  0
  5 33  1  6
  7 34  1  6
  8 35  1  0
  8 36  1  0
 10 37  1  6
 12 38  1  6
 13 39  1  0
 13 40  1  0
 14 41  1  0
 15 42  1  1
 16 43  1  0
 17 44  1  6
 18 45  1  0
 19 46  1  6
 20 47  1  0
 21 48  1  1
 25 49  1  6
M  END


  Mrv1652309122213002D          

 25 27  0  0  1  0            999 V2000
    2.5158    3.8385    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2608    3.0538    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4539    2.8823    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8129    2.4407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5579    1.6561    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0428    0.9887    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5579    0.3212    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8129   -0.4634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6198   -0.6349    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8748   -1.4195    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6817   -1.5911    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9367   -2.3757    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7437   -2.5472    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2957   -1.9341    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3847   -2.9888    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6396   -3.7734    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5777   -2.8172    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0256   -3.4303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3227   -2.0326    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5158   -1.8611    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7733    0.5762    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9483    0.5762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3649   -0.0072    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9483    1.4012    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7733    1.4012    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
 10  9  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 10 19  1  0  0  0  0
 19 20  1  1  0  0  0
  7 21  1  0  0  0  0
 21 22  1  6  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 25 24  1  6  0  0  0
 21 25  1  0  0  0  0
  5 25  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0327966

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=C[C@H]1O[C@@H](CO[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H]2[C@@H]1OC2=O

> <INCHI_IDENTIFIER>
InChI=1S/C16H24O9/c1-6(2)3-7-14-10(15(21)25-14)9(23-7)5-22-16-13(20)12(19)11(18)8(4-17)24-16/h3,7-14,16-20H,4-5H2,1-2H3/t7-,8-,9+,10+,11-,12+,13-,14-,16-/m1/s1

> <INCHI_KEY>
SYRQWOHSFOHYCI-RDRHTQILSA-N

> <FORMULA>
C16H24O9

> <MOLECULAR_WEIGHT>
360.359

> <EXACT_MASS>
360.142032353

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
35.546689617861205

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2R,4R,5S)-4-(2-methylprop-1-en-1-yl)-2-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one

> <JCHEM_LOGP>
-1.3256835753333336

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.200205476743776

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.210858532149176

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981083422290693

> <JCHEM_POLAR_SURFACE_AREA>
134.91

> <JCHEM_REFRACTIVITY>
81.5189

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,4R,5S)-4-(2-methylprop-1-en-1-yl)-2-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       4.696   7.165   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.220   5.700   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.714   5.380   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.251   4.556   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.775   3.091   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       5.680   1.846   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       4.775   0.600   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.251  -0.865   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       6.757  -1.185   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       7.233  -2.650   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       8.739  -2.970   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       9.215  -4.435   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.721  -4.755   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      11.752  -3.610   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       8.185  -5.579   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       8.661  -7.044   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       6.678  -5.259   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       5.648  -6.403   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       6.202  -3.794   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       4.696  -3.474   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       3.310   1.076   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.770   1.076   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       0.681  -0.013   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       1.770   2.616   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       3.310   2.616   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   25                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   21                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   19                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   15                                                  
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   12   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   10   20                                                  
CONECT   20   19                                                            
CONECT   21    7   22   25                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   21    5                                                  
MASTER        0    0    0    0    0    0    0    0   25    0   54    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₂₄O₉

Average Mass

360.3590 Da

Monoisotopic Mass

360.14203 Da

IUPAC Name

(1S,2R,4R,5S)-4-(2-methylprop-1-en-1-yl)-2-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one

Traditional Name

(1S,2R,4R,5S)-4-(2-methylprop-1-en-1-yl)-2-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one

CAS Registry Number

Not Available

SMILES

CC(C)=C[C@H]1O[C@@H](CO[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H]2[C@@H]1OC2=O

InChI Identifier

InChI=1S/C16H24O9/c1-6(2)3-7-14-10(15(21)25-14)9(23-7)5-22-16-13(20)12(19)11(18)8(4-17)24-16/h3,7-14,16-20H,4-5H2,1-2H3/t7-,8-,9+,10+,11-,12+,13-,14-,16-/m1/s1

InChI Key

SYRQWOHSFOHYCI-RDRHTQILSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aruncus dioicus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

O-glycosyl compounds

Alternative Parents

Substituents

Hexose monosaccharide
O-glycosyl compound
1,4-dioxepane
Dioxepane
Oxane
Monosaccharide
Beta_propiolactone
Oxolane
Carboxylic acid ester
Secondary alcohol
Lactone
Oxetane
Acetal
Carboxylic acid derivative
Oxacycle
Dialkyl ether
Organoheterocyclic compound
Ether
Monocarboxylic acid or derivatives
Polyol
Hydrocarbon derivative
Carbonyl group
Primary alcohol
Organic oxide
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.3	ChemAxon
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	134.91 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	81.52 m³·mol⁻¹	ChemAxon
Polarizability	35.55 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

26338799

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

54585601

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Granica S, Fusani P, Stanislawska I, Piwowarski JP, Melck D, Motta A, Zidorn C: Monoterpenoids from the traditional North Italian vegetable Aruncus dioicus (Walter) Fernald var. vulgaris (Maxim.) H.Hara (Rosaceae). Food Chem. 2017 Apr 15;221:1851-1859. doi: 10.1016/j.foodchem.2016.10.090. Epub 2016 Oct 22. [PubMed:27979172 ]
Jeong SY, Jun do Y, Kim YH, Min BS, Min BK, Woo MH: Monoterpenoids from the aerial parts of Aruncus dioicus var. kamtschaticus and their antioxidant and cytotoxic activities. Bioorg Med Chem Lett. 2011 Jun 1;21(11):3252-6. doi: 10.1016/j.bmcl.2011.04.043. Epub 2011 Apr 17. [PubMed:21546250 ]
LOTUS database [Link]

Showing NP-Card for (1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one (NP0327966)

MOL for NP0327966 ((1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one)

3D MOL for NP0327966 ((1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one)

3D SDF for NP0327966 ((1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one)

3D-SDF for NP0327966 ((1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one)

PDB for NP0327966 ((1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one)

3D PDB for NP0327966 ((1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one)

SMILES for NP0327966 ((1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one)

INCHI for NP0327966 ((1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one)

Structure for NP0327966 ((1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one)

3D Structure for NP0327966 ((1s,2r,4r,5s)-4-(2-methylprop-1-en-1-yl)-2-({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3,6-dioxabicyclo[3.2.0]heptan-7-one)