NP-MRD: Showing NP-Card for 1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid (NP0327592)

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Record Information

Version

2.0

Created at

2022-09-12 10:18:24 UTC

Updated at

2022-09-12 10:18:25 UTC

NP-MRD ID

NP0327592

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid

Description

1-(3-{3-[(1-Carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9H-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole. 1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid is found in Mycena metata. Based on a literature review very few articles have been published on 1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9H-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122212182D          

 37 40  0  0  0  0            999 V2000
    5.7655    0.2203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309122212182D          

 37 40  0  0  0  0            999 V2000
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 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 26 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 21 34  2  0  0  0  0
  9 34  1  0  0  0  0
  5 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0327592

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)CC(NC(=O)C1=CC2=C(NC3=C2C=C(O)C=C3)C(CCC(=O)N2CCCC2C(O)=O)=N1)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C26H30N4O7/c1-13(2)10-20(25(34)35)29-24(33)19-12-16-15-11-14(31)5-6-17(15)28-23(16)18(27-19)7-8-22(32)30-9-3-4-21(30)26(36)37/h5-6,11-13,20-21,28,31H,3-4,7-10H2,1-2H3,(H,29,33)(H,34,35)(H,36,37)

> <INCHI_KEY>
GJJLJDWKCBHBMW-UHFFFAOYSA-N

> <FORMULA>
C26H30N4O7

> <MOLECULAR_WEIGHT>
510.547

> <EXACT_MASS>
510.211449322

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
67

> <JCHEM_AVERAGE_POLARIZABILITY>
53.59009579373507

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9H-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid

> <JCHEM_LOGP>
2.0230518296666666

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
4.103037960759387

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.499574412498638

> <JCHEM_PKA_STRONGEST_BASIC>
0.874158413109671

> <JCHEM_POLAR_SURFACE_AREA>
172.92

> <JCHEM_REFRACTIVITY>
131.62269999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9H-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0      10.762   0.411   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.096   1.181   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      12.096   2.721   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      13.430   0.411   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      14.763   1.181   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0      16.097   0.411   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0      17.431   1.181   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      17.431   2.721   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      18.764   0.411   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      18.764  -1.129   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      20.098  -1.899   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      21.432  -1.129   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0      22.576  -2.159   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0      21.950  -3.566   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      22.576  -4.973   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      21.671  -6.219   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      20.139  -6.058   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      19.234  -7.304   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      19.513  -4.651   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      20.418  -3.405   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      21.432   0.411   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      22.765   1.181   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      22.765   2.721   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      24.099   3.491   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      25.433   2.721   0.000  0.00  0.00           O+0
HETATM   26  N   UNK     0      24.099   5.031   0.000  0.00  0.00           N+0
HETATM   27  C   UNK     0      22.853   5.936   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      23.329   7.401   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      24.869   7.401   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      25.345   5.936   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      26.810   5.461   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      27.954   6.491   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0      27.130   3.954   0.000  0.00  0.00           O+0
HETATM   34  N   UNK     0      20.098   1.181   0.000  0.00  0.00           N+0
HETATM   35  C   UNK     0      14.763   2.721   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      16.097   3.491   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0      13.430   3.491   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   35                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   34                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   20                                                  
CONECT   12   11   13   21                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   20                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   14   11                                                  
CONECT   21   12   22   34                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   30                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   26   31                                                  
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31                                                            
CONECT   34   21    9                                                       
CONECT   35    5   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   80    0
END

View in JSmol

Synonyms

Value	Source
1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9H-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylate	Generator

Chemical Formula

C₂₆H₃₀N₄O₇

Average Mass

510.5470 Da

Monoisotopic Mass

510.21145 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC(C)CC(NC(=O)C1=CC2=C(NC3=C2C=C(O)C=C3)C(CCC(=O)N2CCCC2C(O)=O)=N1)C(O)=O

InChI Identifier

InChI=1S/C26H30N4O7/c1-13(2)10-20(25(34)35)29-24(33)19-12-16-15-11-14(31)5-6-17(15)28-23(16)18(27-19)7-8-22(32)30-9-3-4-21(30)26(36)37/h5-6,11-13,20-21,28,31H,3-4,7-10H2,1-2H3,(H,29,33)(H,34,35)(H,36,37)

InChI Key

GJJLJDWKCBHBMW-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Mycena metata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Harmala alkaloids

Sub Class

Not Available

Direct Parent

Harmala alkaloids

Alternative Parents

Substituents

Harman
Leucine or derivatives
Pyridoindole
Beta-carboline
N-acyl-alpha amino acid or derivatives
Proline or derivatives
N-acyl-alpha-amino acid
Alpha-amino acid or derivatives
Hydroxyindole
Pyridine carboxylic acid or derivatives
Indole
Indole or derivatives
2-heteroaryl carboxamide
Pyrrolidine carboxylic acid
Pyrrolidine carboxylic acid or derivatives
N-acylpyrrolidine
1-hydroxy-2-unsubstituted benzenoid
Pyridine
Benzenoid
Dicarboxylic acid or derivatives
Heteroaromatic compound
Tertiary carboxylic acid amide
Pyrrolidine
Pyrrole
Carboxamide group
Secondary carboxylic acid amide
Organoheterocyclic compound
Azacycle
Carboxylic acid
Carboxylic acid derivative
Organonitrogen compound
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Organooxygen compound
Organic oxygen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

78119472

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid (NP0327592)

MOL for NP0327592 (1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid)

3D MOL for NP0327592 (1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid)

3D SDF for NP0327592 (1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid)

3D-SDF for NP0327592 (1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid)

PDB for NP0327592 (1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid)

3D PDB for NP0327592 (1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid)

SMILES for NP0327592 (1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid)

INCHI for NP0327592 (1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid)

Structure for NP0327592 (1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid)

3D Structure for NP0327592 (1-(3-{3-[(1-carboxy-3-methylbutyl)carbamoyl]-6-hydroxy-9h-pyrido[3,4-b]indol-1-yl}propanoyl)pyrrolidine-2-carboxylic acid)