NP-MRD: Showing NP-Card for (2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate (NP0327541)

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Record Information

Version

1.0

Created at

2022-09-12 10:12:47 UTC

Updated at

2022-09-12 10:12:47 UTC

NP-MRD ID

NP0327541

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate

Description

5-Methoxy-4,4'-di-O-methylsecolariciresinol diacetate belongs to the class of organic compounds known as dibenzylbutane lignans. These are lignan compounds containing a 2,3-dibenzylbutane moiety. (2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate is found in Justicia procumbens. It was first documented in 1998 (PMID: 9548850). Based on a literature review very few articles have been published on 5-Methoxy-4,4'-di-O-methylsecolariciresinol diacetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122212122D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309122212122D          

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 23 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 26 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 29 32  2  0  0  0  0
 21 32  1  0  0  0  0
  6 33  1  0  0  0  0
 33 34  2  0  0  0  0
  3 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0327541

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C(C[C@@H](COC(C)=O)[C@H](COC(C)=O)CC2=CC(OC)=C(OC)C(OC)=C2)C=C1OC

> <INCHI_IDENTIFIER>
InChI=1S/C27H36O9/c1-17(28)35-15-21(10-19-8-9-23(30-3)24(12-19)31-4)22(16-36-18(2)29)11-20-13-25(32-5)27(34-7)26(14-20)33-6/h8-9,12-14,21-22H,10-11,15-16H2,1-7H3/t21-,22-/m0/s1

> <INCHI_KEY>
RSFSYSLFHHDDAP-VXKWHMMOSA-N

> <FORMULA>
C27H36O9

> <MOLECULAR_WEIGHT>
504.576

> <EXACT_MASS>
504.235932739

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
72

> <JCHEM_AVERAGE_POLARIZABILITY>
54.21966942710317

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3R)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate

> <JCHEM_LOGP>
3.3492287496666657

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.21048707240665

> <JCHEM_POLAR_SURFACE_AREA>
98.75000000000001

> <JCHEM_REFRACTIVITY>
133.01779999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       2.520 -13.642   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       1.512 -12.478   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       2.016 -11.023   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.008  -9.859   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.512  -8.403   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.024  -8.112   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.529  -6.657   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.520  -5.493   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.008  -5.784   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       0.000  -4.620   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      -1.512  -4.911   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.520  -3.747   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -2.016  -6.366   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       3.024  -4.038   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.537  -3.747   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       5.545  -4.911   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       7.057  -4.620   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.561  -3.165   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.065  -5.784   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       2.016  -2.874   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.520  -1.419   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.512  -0.255   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.016   1.201   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       1.008   2.365   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       1.512   3.820   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.529   1.492   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       4.033   2.947   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       3.024   4.111   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.537   0.328   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       6.049   0.619   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       7.057  -0.546   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       4.033  -1.128   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       4.033  -9.277   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       3.529 -10.732   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       4.537 -11.896   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       4.033 -13.351   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   34                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   33                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   14                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    8   15   20                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20   14   21                                                       
CONECT   21   20   22   32                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   26                                                  
CONECT   24   23   25                                                       
CONECT   25   24                                                            
CONECT   26   23   27   29                                                  
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29   26   30   32                                                  
CONECT   30   29   31                                                       
CONECT   31   30                                                            
CONECT   32   29   21                                                       
CONECT   33    6   34                                                       
CONECT   34   33    3   35                                                  
CONECT   35   34   36                                                       
CONECT   36   35                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   74    0
END

View in JSmol

Synonyms

Value	Source
5-Methoxy-4,4'-di-O-methylsecolariciresinol diacetic acid	Generator

Chemical Formula

C₂₇H₃₆O₉

Average Mass

504.5760 Da

Monoisotopic Mass

504.23593 Da

IUPAC Name

(2R,3R)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate

Traditional Name

(2R,3R)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate

CAS Registry Number

Not Available

SMILES

COC1=CC=C(C[C@@H](COC(C)=O)[C@H](COC(C)=O)CC2=CC(OC)=C(OC)C(OC)=C2)C=C1OC

InChI Identifier

InChI=1S/C27H36O9/c1-17(28)35-15-21(10-19-8-9-23(30-3)24(12-19)31-4)22(16-36-18(2)29)11-20-13-25(32-5)27(34-7)26(14-20)33-6/h8-9,12-14,21-22H,10-11,15-16H2,1-7H3/t21-,22-/m0/s1

InChI Key

RSFSYSLFHHDDAP-VXKWHMMOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Justicia procumbens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dibenzylbutane lignans. These are lignan compounds containing a 2,3-dibenzylbutane moiety.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Dibenzylbutane lignans

Sub Class

Not Available

Direct Parent

Dibenzylbutane lignans

Alternative Parents

Substituents

Dibenzylbutane lignan skeleton
O-dimethoxybenzene
Dimethoxybenzene
Phenoxy compound
Anisole
Methoxybenzene
Phenol ether
Alkyl aryl ether
Monocyclic benzene moiety
Benzenoid
Dicarboxylic acid or derivatives
Carboxylic acid ester
Carboxylic acid derivative
Ether
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Organooxygen compound
Organic oxide
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.35	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	98.75 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	133.02 m³·mol⁻¹	ChemAxon
Polarizability	54.22 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8704914

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10529518

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Chen CC, Hsin WC, Huang YL: Six New Diarylbutane Lignans from Justicia procumbens. J Nat Prod. 1998 Feb 27;61(2):227-9. doi: 10.1021/np9703860. [PubMed:9548850 ]
LOTUS database [Link]

Showing NP-Card for (2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate (NP0327541)

MOL for NP0327541 ((2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate)

3D MOL for NP0327541 ((2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate)

3D SDF for NP0327541 ((2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate)

3D-SDF for NP0327541 ((2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate)

PDB for NP0327541 ((2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate)

3D PDB for NP0327541 ((2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate)

SMILES for NP0327541 ((2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate)

INCHI for NP0327541 ((2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate)

Structure for NP0327541 ((2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate)

3D Structure for NP0327541 ((2r,3r)-4-(acetyloxy)-2-[(3,4-dimethoxyphenyl)methyl]-3-[(3,4,5-trimethoxyphenyl)methyl]butyl acetate)