NP-MRD: Showing NP-Card for (5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one (NP0327426)

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Record Information

Version

1.0

Created at

2022-09-12 09:59:32 UTC

Updated at

2022-09-12 09:59:32 UTC

NP-MRD ID

NP0327426

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one

Description

Cytochalasin Z25 belongs to the class of organic compounds known as isoindolones. These are aromatic polycyclic compounds that an isoindole bearing a ketone. It was first documented in 2014 (PMID: 24827690). Based on a literature review a significant number of articles have been published on Cytochalasin Z25 (PMID: 36130844) (PMID: 36130843) (PMID: 36130842) (PMID: 36130841).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122211592D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309122211592D          

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M  END
> <DATABASE_ID>
NP0327426

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@H]2[C@H](CC3=CC=C(O)C=C3)N=C(O)[C@]22OC(=O)\C=C\[C@@H](C)C(O)[C@@H](C)C\C=C\[C@H]2C=C1C

> <INCHI_IDENTIFIER>
InChI=1S/C28H35NO5/c1-16-6-5-7-21-14-18(3)19(4)25-23(15-20-9-11-22(30)12-10-20)29-27(33)28(21,25)34-24(31)13-8-17(2)26(16)32/h5,7-14,16-17,19,21,23,25-26,30,32H,6,15H2,1-4H3,(H,29,33)/b7-5+,13-8+/t16-,17+,19+,21-,23-,25-,26?,28+/m0/s1

> <INCHI_KEY>
SPWDDTRKTNRBSL-XNGFQOLTSA-N

> <FORMULA>
C28H35NO5

> <MOLECULAR_WEIGHT>
465.59

> <EXACT_MASS>
465.251523231

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
51.45466076340668

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5R,7S,13S,13aS,14S,16aR,16bS)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-2H,5H,6H,7H,8H,13H,13aH,14H,16bH-oxacyclododeca[3,2-e]isoindol-2-one

> <JCHEM_LOGP>
3.7585806361680607

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.504999240478758

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8400668823491872

> <JCHEM_PKA_STRONGEST_BASIC>
4.723939938862731

> <JCHEM_POLAR_SURFACE_AREA>
99.35000000000001

> <JCHEM_REFRACTIVITY>
133.922

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(5R,7S,13S,13aS,14S,16aR,16bS)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5H,6H,7H,8H,13H,13aH,14H,16bH-oxacyclododeca[3,2-e]isoindol-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.904  -1.345   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.567  -2.109   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.764  -1.334   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.100  -2.098   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.431  -1.323   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.195   0.014   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.735   0.021   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.072  -0.744   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.157   0.350   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.848  -2.074   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       9.334  -1.669   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       7.854  -3.614   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.191  -4.379   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.524  -4.390   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.759  -5.727   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.219  -5.733   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       3.827  -7.222   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       2.827  -5.179   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       2.107  -3.638   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.256  -4.664   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       4.761  -4.337   0.000  0.00  0.00           O+0
HETATM   22  N   UNK     0       2.635  -6.073   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0       1.103  -5.919   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.077  -7.067   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.430  -6.753   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -2.456  -7.902   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -3.964  -7.588   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -4.446  -6.126   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -5.953  -5.812   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -3.420  -4.977   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -1.912  -5.291   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       0.776  -4.414   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -0.560  -3.649   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -1.891  -4.425   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   33                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   19                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18    4   20   32                                             
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24   32                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   31                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   25                                                       
CONECT   32   23   19   33                                                  
CONECT   33   32    2   34                                                  
CONECT   34   33                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₃₅NO₅

Average Mass

465.5900 Da

Monoisotopic Mass

465.25152 Da

IUPAC Name

(5R,7S,13S,13aS,14S,16aR,16bS)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-2H,5H,6H,7H,8H,13H,13aH,14H,16bH-oxacyclododeca[3,2-e]isoindol-2-one

Traditional Name

(5R,7S,13S,13aS,14S,16aR,16bS)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5H,6H,7H,8H,13H,13aH,14H,16bH-oxacyclododeca[3,2-e]isoindol-2-one

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@H]2[C@H](CC3=CC=C(O)C=C3)N=C(O)[C@]22OC(=O)\C=C\[C@@H](C)C(O)[C@@H](C)C\C=C\[C@H]2C=C1C

InChI Identifier

InChI=1S/C28H35NO5/c1-16-6-5-7-21-14-18(3)19(4)25-23(15-20-9-11-22(30)12-10-20)29-27(33)28(21,25)34-24(31)13-8-17(2)26(16)32/h5,7-14,16-17,19,21,23,25-26,30,32H,6,15H2,1-4H3,(H,29,33)/b7-5+,13-8+/t16-,17+,19+,21-,23-,25-,26?,28+/m0/s1

InChI Key

SPWDDTRKTNRBSL-XNGFQOLTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isoindolones. These are aromatic polycyclic compounds that an isoindole bearing a ketone.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Isoindoles and derivatives

Sub Class

Isoindolines

Direct Parent

Isoindolones

Alternative Parents

Substituents

Isoindolone
Isoindole
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
Monocyclic benzene moiety
Cyclic carboximidic acid
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Pyrroline
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Azacycle
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.76	ChemAxon
pKa (Strongest Acidic)	1.84	ChemAxon
pKa (Strongest Basic)	4.72	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	99.35 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	133.92 m³·mol⁻¹	ChemAxon
Polarizability	51.45 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78441039

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139585442

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Liu JT, Hu B, Gao Y, Zhang JP, Jiao BH, Lu XL, Liu XY: Bioactive tyrosine-derived cytochalasins from fungus Eutypella sp. D-1. Chem Biodivers. 2014 May;11(5):800-6. doi: 10.1002/cbdv.201300218. [PubMed:24827690 ]
Cani I, Righini M, Cenni P, Foschi M: Teaching NeuroImage: Partially Reversible Widespread Leukoencephalopathy Associated With Atypical Hemolytic Uremic Syndrome. Neurology. 2022 Sep 21. pii: WNL.0000000000201378. doi: 10.1212/WNL.0000000000201378. [PubMed:36130844 ]
Sasaki R, Morimoto S, Ozawa F, Okano H, Yoshida M, Ishiura H, Tsuji S, Kuzuhara S, Kokubo Y: APOE Alleles With Tau and Abeta Pathology In Patients With Amyotrophic Lateral Sclerosis and Parkinsonism-Dementia Complex in the Kii Peninsula. Neurology. 2022 Sep 21. pii: WNL.0000000000201156. doi: 10.1212/WNL.0000000000201156. [PubMed:36130843 ]
Zhang Z, Wang M, Gill D, Liu X: Genetically Predicted Smoking and Alcohol Consumption and Functional Outcome After Ischemic Stroke. Neurology. 2022 Sep 21. pii: WNL.0000000000201291. doi: 10.1212/WNL.0000000000201291. [PubMed:36130842 ]
Khamis S, Mitakidou MR, Champion M, Goyal S, Jones RL, Siddiqui A, Sabanathan S, Hedderly T, Lin JP, Jungbluth H, Papandreou A: Clinical Reasoning: A Teenage Girl With Progressive Hyperkinetic Movements, Seizures, and Encephalopathy. Neurology. 2022 Sep 21. pii: WNL.0000000000201385. doi: 10.1212/WNL.0000000000201385. [PubMed:36130841 ]
LOTUS database [Link]

Showing NP-Card for (5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one (NP0327426)

MOL for NP0327426 ((5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one)

3D MOL for NP0327426 ((5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one)

3D SDF for NP0327426 ((5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one)

3D-SDF for NP0327426 ((5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one)

PDB for NP0327426 ((5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one)

3D PDB for NP0327426 ((5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one)

SMILES for NP0327426 ((5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one)

INCHI for NP0327426 ((5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one)

Structure for NP0327426 ((5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one)

3D Structure for NP0327426 ((5r,7s,10as,13s,13as,14s,16ar)-6,16-dihydroxy-14-[(4-hydroxyphenyl)methyl]-5,7,12,13-tetramethyl-5h,6h,7h,8h,10ah,13h,13ah,14h-oxacyclododeca[3,2-d]isoindol-2-one)