NP-MRD: Showing NP-Card for 1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one (NP0327351)

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Record Information

Version

2.0

Created at

2022-09-12 09:51:33 UTC

Updated at

2022-09-12 09:51:34 UTC

NP-MRD ID

NP0327351

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one

Description

1,4,7,14-Tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3H,6H,9H,10H,12H,13H,14H,14aH-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds. 1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one is found in Bipolaris zeicola. 1,4,7,14-Tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3H,6H,9H,10H,12H,13H,14H,14aH-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004171500412D          

 32 34  0  0  0  0            999 V2000
    2.7770    5.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    4.3164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    4.3164    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    4.7289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    5.5539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105    4.3164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6039    4.7289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105    3.4914    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3020    2.7770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1270    2.7770    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1444    1.2779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9290    1.0229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    0.7930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1905    1.2779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9355    2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.6500    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.3645    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.7934    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2224    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1533004171500412D          

 32 34  0  0  0  0            999 V2000
    2.7770    5.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    4.3164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
NP0327351

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1NC(=O)C2C(O)CCN2C(=O)C(CCCCCC(=O)C2CO2)NC(=O)C(C)NC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C21H32N4O7/c1-11-18(28)22-12(2)19(29)24-13(6-4-3-5-7-14(26)16-10-32-16)21(31)25-9-8-15(27)17(25)20(30)23-11/h11-13,15-17,27H,3-10H2,1-2H3,(H,22,28)(H,23,30)(H,24,29)

> <INCHI_KEY>
NZFQDHZWYOBUCF-UHFFFAOYSA-N

> <FORMULA>
C21H32N4O7

> <MOLECULAR_WEIGHT>
452.508

> <EXACT_MASS>
452.227099386

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
45.97918533912531

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
14-hydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-tetradecahydropyrrolo[1,2-a]1,4,7,10-tetraazacyclododecane-1,4,7,10-tetrone

> <ALOGPS_LOGP>
-0.89

> <JCHEM_LOGP>
-1.8446174099999997

> <ALOGPS_LOGS>
-1.62

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.244282333795365

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.706107923796127

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0991001026988583

> <JCHEM_POLAR_SURFACE_AREA>
157.44

> <JCHEM_REFRACTIVITY>
110.57079999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.08e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
14-hydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-decahydropyrrolo[1,2-a]1,4,7,10-tetraazacyclododecane-1,4,7,10-tetrone

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0       5.184   9.391   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.414   8.057   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0       2.874   8.057   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0       1.540   8.827   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       1.540  10.367   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.206   8.057   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.127   8.827   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       0.206   6.517   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0      -0.564   5.184   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -2.104   5.184   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.206   3.850   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.270   2.385   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -1.734   1.909   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       0.976   1.480   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.222   2.385   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0       1.746   3.850   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0       3.080   3.080   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       3.080   1.540   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       4.414   3.850   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.747   3.080   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.081   3.850   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.415   3.080   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.748   3.850   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      11.082   3.080   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      12.416   3.850   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      12.416   5.390   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      13.749   3.080   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      15.289   3.080   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      14.519   1.746   0.000  0.00  0.00           O+0
HETATM   30  N   UNK     0       4.414   5.390   0.000  0.00  0.00           N+0
HETATM   31  C   UNK     0       5.184   6.724   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       6.724   6.724   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   31                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   16                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11   17                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   30                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   29                                                  
CONECT   28   27   29                                                       
CONECT   29   28   27                                                       
CONECT   30   19   31                                                       
CONECT   31   30    2   32                                                  
CONECT   32   31                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   68    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₃₂N₄O₇

Average Mass

452.5080 Da

Monoisotopic Mass

452.22710 Da

IUPAC Name

14-hydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-tetradecahydropyrrolo[1,2-a]1,4,7,10-tetraazacyclododecane-1,4,7,10-tetrone

Traditional Name

14-hydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-decahydropyrrolo[1,2-a]1,4,7,10-tetraazacyclododecane-1,4,7,10-tetrone

CAS Registry Number

Not Available

SMILES

CC1NC(=O)C2C(O)CCN2C(=O)C(CCCCCC(=O)C2CO2)NC(=O)C(C)NC1=O

InChI Identifier

InChI=1S/C21H32N4O7/c1-11-18(28)22-12(2)19(29)24-13(6-4-3-5-7-14(26)16-10-32-16)21(31)25-9-8-15(27)17(25)20(30)23-11/h11-13,15-17,27H,3-10H2,1-2H3,(H,22,28)(H,23,30)(H,24,29)

InChI Key

NZFQDHZWYOBUCF-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Bipolaris zeicola	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Oligopeptides

Alternative Parents

Substituents

Alpha-oligopeptide
Cyclic alpha peptide
Macrolactam
Alpha-amino acid or derivatives
Monosaccharide
Pyrrolidine
Tertiary carboxylic acid amide
Carboxamide group
Ketone
Lactam
Secondary carboxylic acid amide
Secondary alcohol
Dialkyl ether
Oxirane
Ether
Oxacycle
Azacycle
Organoheterocyclic compound
Organic oxide
Organic nitrogen compound
Alcohol
Hydrocarbon derivative
Carbonyl group
Organic oxygen compound
Organonitrogen compound
Organooxygen compound
Organopnictogen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.89	ALOGPS
logP	-1.8	ChemAxon
logS	-1.6	ALOGPS
pKa (Strongest Acidic)	10.71	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	157.44 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	110.57 m³·mol⁻¹	ChemAxon
Polarizability	45.98 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

181389

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one (NP0327351)

MOL for NP0327351 (1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one)

3D MOL for NP0327351 (1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one)

3D SDF for NP0327351 (1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one)

3D-SDF for NP0327351 (1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one)

PDB for NP0327351 (1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one)

3D PDB for NP0327351 (1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one)

SMILES for NP0327351 (1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one)

INCHI for NP0327351 (1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one)

Structure for NP0327351 (1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one)

3D Structure for NP0327351 (1,4,7,14-tetrahydroxy-3,6-dimethyl-9-[6-(oxiran-2-yl)-6-oxohexyl]-3h,6h,9h,12h,13h,14h,14ah-pyrrolo[1,2-a]1,4,7,10-tetraazacyclododecan-10-one)