NP-MRD: Showing NP-Card for (1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol (NP0327290)

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Record Information

Version

2.0

Created at

2022-09-12 09:44:29 UTC

Updated at

2022-09-12 09:44:29 UTC

NP-MRD ID

NP0327290

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol

Description

Abscisterol F belongs to the class of organic compounds known as androgens and derivatives. These are 3-hydroxylated C19 steroid hormones. They are known to favor the development of masculine characteristics. They also show profound effects on scalp and body hair in humans. (1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol is found in Pezicula livida. It was first documented in 2022 (PMID: 36130709). Based on a literature review a significant number of articles have been published on Abscisterol F (PMID: 36130592) (PMID: 36130585) (PMID: 36130517) (PMID: 36130480).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122211442D          

 29 32  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309122211442D          

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M  END
> <DATABASE_ID>
NP0327290

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C(=C)C\C=C/[C@H]1CC[C@H]2C3=CC[C@H]4C[C@@H](O)CC[C@]4(CO)[C@H]3CC[C@]12C

> <INCHI_IDENTIFIER>
InChI=1S/C27H42O2/c1-18(2)19(3)6-5-7-20-9-11-24-23-10-8-21-16-22(29)12-15-27(21,17-28)25(23)13-14-26(20,24)4/h5,7,10,18,20-22,24-25,28-29H,3,6,8-9,11-17H2,1-2,4H3/b7-5-/t20-,21-,22-,24-,25-,26+,27+/m0/s1

> <INCHI_KEY>
MGUPDIUDFLRFKN-CZJUOIDJSA-N

> <FORMULA>
C27H42O2

> <MOLECULAR_WEIGHT>
398.631

> <EXACT_MASS>
398.318480592

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
49.278156349584926

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2R,5S,7S,11R,14R,15R)-2-(hydroxymethyl)-15-methyl-14-[(1Z)-5-methyl-4-methylidenehex-1-en-1-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-5-ol

> <JCHEM_LOGP>
5.1225504063333345

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.308680891568176

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.361664780061396

> <JCHEM_PKA_STRONGEST_BASIC>
-0.7726457789090316

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
123.28529999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,5S,7S,11R,14R,15R)-2-(hydroxymethyl)-15-methyl-14-[(1Z)-5-methyl-4-methylidenehex-1-en-1-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-5-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       0.206  -5.231   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.151  -4.015   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.676  -4.226   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.257  -5.652   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.782  -5.863   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.727  -4.647   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.299  -3.168   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.574  -2.304   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.790  -3.249   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.306  -2.978   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.829  -1.529   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.345  -1.258   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      12.338  -2.436   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      13.854  -2.164   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      14.846  -3.342   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      16.362  -3.071   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      14.323  -4.790   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      12.807  -5.061   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      11.814  -3.884   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      11.291  -5.332   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      12.284  -6.510   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      10.299  -4.155   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.775  -5.603   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       8.259  -5.874   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.267  -4.697   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.595  -6.083   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.571  -2.589   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.955  -2.378   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       1.516  -1.373   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   27                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   25                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   25                                                  
CONECT   10    9   11   22                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   19                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   13   20   22                                             
CONECT   20   19   21                                                       
CONECT   21   20                                                            
CONECT   22   19   10   23                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24    6    9   26                                             
CONECT   26   25                                                            
CONECT   27    2   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₂O₂

Average Mass

398.6310 Da

Monoisotopic Mass

398.31848 Da

IUPAC Name

(1S,2R,5S,7S,11R,14R,15R)-2-(hydroxymethyl)-15-methyl-14-[(1Z)-5-methyl-4-methylidenehex-1-en-1-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-5-ol

Traditional Name

(1S,2R,5S,7S,11R,14R,15R)-2-(hydroxymethyl)-15-methyl-14-[(1Z)-5-methyl-4-methylidenehex-1-en-1-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-5-ol

CAS Registry Number

Not Available

SMILES

CC(C)C(=C)C\C=C/[C@H]1CC[C@H]2C3=CC[C@H]4C[C@@H](O)CC[C@]4(CO)[C@H]3CC[C@]12C

InChI Identifier

InChI=1S/C27H42O2/c1-18(2)19(3)6-5-7-20-9-11-24-23-10-8-21-16-22(29)12-15-27(21,17-28)25(23)13-14-26(20,24)4/h5,7,10,18,20-22,24-25,28-29H,3,6,8-9,11-17H2,1-2,4H3/b7-5-/t20-,21-,22-,24-,25-,26+,27+/m0/s1

InChI Key

MGUPDIUDFLRFKN-CZJUOIDJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pezicula livida	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as androgens and derivatives. These are 3-hydroxylated C19 steroid hormones. They are known to favor the development of masculine characteristics. They also show profound effects on scalp and body hair in humans.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Androstane steroids

Direct Parent

Androgens and derivatives

Alternative Parents

Substituents

19-hydroxysteroid
Androgen-skeleton
3-beta-hydroxysteroid
Hydroxysteroid
3-hydroxysteroid
3-hydroxy-delta-7-steroid
Delta-7-steroid
Cyclic alcohol
Secondary alcohol
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.12	ChemAxon
pKa (Strongest Acidic)	18.36	ChemAxon
pKa (Strongest Basic)	-0.77	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	123.29 m³·mol⁻¹	ChemAxon
Polarizability	49.28 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78438289

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139587790

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Slowing K, Gomez F, Delgado M, Fernandez de la Rosa R, Hernandez-Martin N, Pozo MA, Garcia-Garcia L: PET Imaging and Neurohistochemistry Reveal that Curcumin Attenuates Brain Hypometabolism and Hippocampal Damage induced by Status Epilepticus in Rats. Planta Med. 2022 Sep 21. doi: 10.1055/a-1948-4378. [PubMed:36130709 ]
Ye L, Wang X, McFarland A, Madsen JJ: (19)F NMR: A promising tool for dynamic conformational studies of G protein-coupled receptors. Structure. 2022 Sep 7. pii: S0969-2126(22)00351-3. doi: 10.1016/j.str.2022.08.007. [PubMed:36130592 ]
Terheyden JH, Finger RP, Wicharz F, Herrmann P, Holz FG, Tufail A, Muller PL: Properties of patient-reported outcome measures in recessive Stargardt disease. Ophthalmologica. 2022 Sep 21. pii: 000527093. doi: 10.1159/000527093. [PubMed:36130585 ]
Rush SA, Brar G, Hsieh CL, Chautard E, Rainho-Tomko JN, Slade CD, Bricault CA, Kume A, Kearns J, Groppo R, Mundle ST, Zhang L, Casimiro D, Fu TM, DiNapoli JM, McLellan JS: Characterization of prefusion-F-specific antibodies elicited by natural infection with human metapneumovirus. Cell Rep. 2022 Sep 20;40(12):111399. doi: 10.1016/j.celrep.2022.111399. [PubMed:36130517 ]
Richard G, Blondin DP, Syed SA, Rossi L, Fontes ME, Fortin M, Phoenix S, Frisch F, Dubreuil S, Guerin B, Turcotte EE, Lepage M, Surette MG, Schertzer JD, Steinberg GR, Morrison KM, Carpentier AC: High-fructose feeding suppresses cold-stimulated brown adipose tissue glucose uptake independently of changes in thermogenesis and the gut microbiome. Cell Rep Med. 2022 Sep 20;3(9):100742. doi: 10.1016/j.xcrm.2022.100742. [PubMed:36130480 ]
LOTUS database [Link]

Showing NP-Card for (1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol (NP0327290)

MOL for NP0327290 ((1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol)

3D MOL for NP0327290 ((1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol)

3D SDF for NP0327290 ((1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol)

3D-SDF for NP0327290 ((1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol)

PDB for NP0327290 ((1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol)

3D PDB for NP0327290 ((1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol)

SMILES for NP0327290 ((1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol)

INCHI for NP0327290 ((1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol)

Structure for NP0327290 ((1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol)

3D Structure for NP0327290 ((1r,3ar,5as,7s,9ar,9bs,11ar)-9a-(hydroxymethyl)-11a-methyl-1-[(1z)-5-methyl-4-methylidenehex-1-en-1-yl]-1h,2h,3h,3ah,5h,5ah,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-ol)