NP-MRD: Showing NP-Card for (2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol (NP0326991)

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Record Information

Version

2.0

Created at

2022-09-12 09:07:46 UTC

Updated at

2022-09-12 09:07:46 UTC

NP-MRD ID

NP0326991

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol

Description

ELEUTHEROSIDE C belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. (2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol is found in Justicia adhatoda and Rubus niveus. (2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol was first documented in 2022 (PMID: 35990602). Based on a literature review very few articles have been published on ELEUTHEROSIDE C.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 30  0  0  0  0  0  0  0  0999 V2000
    4.0267    1.0429    0.4415 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5938    0.8586    0.8973 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8564    0.4665   -0.1912 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5051    0.2608    0.0963 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1832    1.2015   -0.6211 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5203    1.0194   -0.7531 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2945    1.3702    0.5202 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8999    0.6002    1.5904 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9434   -0.3052   -1.3002 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1303   -0.6728   -0.6399 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9015   -1.3774   -1.1969 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5790   -2.5726   -0.9109 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1430   -1.1499   -0.1676 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2836   -1.8826   -0.5454 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9833    1.5554   -0.5484 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4271    0.0250    0.2477 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6035    1.6102    1.1829 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1781    1.7848    1.3362 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5465    0.0444    1.6497 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4011    0.4875    1.1984 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8673    1.7934   -1.5050 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3826    1.2357    0.3527 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1543    2.4311    0.7960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1798    1.0149    2.4271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2443   -0.2521   -2.3884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0191   -1.4921   -0.1159 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4127   -1.5539   -2.1923 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9978   -3.1693   -0.3613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2048   -1.6435    0.7850 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3664   -2.7310   -0.0838 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  6  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 13  4  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  2 19  1  0
  4 20  1  1
  6 21  1  6
  7 22  1  0
  7 23  1  0
  8 24  1  0
  9 25  1  6
 10 26  1  0
 11 27  1  6
 12 28  1  0
 13 29  1  1
 14 30  1  0
M  END


  Mrv1652309122211072D          

 14 14  0  0  1  0            999 V2000
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  1  0  0  0  0
  6  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
  4 13  1  0  0  0  0
 13 14  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0326991

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C8H16O6/c1-2-13-8-7(12)6(11)5(10)4(3-9)14-8/h4-12H,2-3H2,1H3/t4-,5+,6+,7-,8+/m1/s1

> <INCHI_KEY>
WYUFTYLVLQZQNH-HNEXDWKRSA-N

> <FORMULA>
C8H16O6

> <MOLECULAR_WEIGHT>
208.21

> <EXACT_MASS>
208.094688235

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
20.16792515785828

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,4S,5R,6R)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_LOGP>
-1.9326047596666664

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.200261997443143

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.211001072696597

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810834093135563

> <JCHEM_POLAR_SURFACE_AREA>
99.38000000000001

> <JCHEM_REFRACTIVITY>
45.423199999999994

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5R,6R)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       5.335  -0.000   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   13                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7    9                                                  
CONECT    7    6    8                                                       
CONECT    8    7                                                            
CONECT    9    6   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11    4   14                                                  
CONECT   14   13                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   28    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₈H₁₆O₆

Average Mass

208.2100 Da

Monoisotopic Mass

208.09469 Da

IUPAC Name

(2S,3R,4S,5R,6R)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

(2S,3R,4S,5R,6R)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

CCO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C8H16O6/c1-2-13-8-7(12)6(11)5(10)4(3-9)14-8/h4-12H,2-3H2,1H3/t4-,5+,6+,7-,8+/m1/s1

InChI Key

WYUFTYLVLQZQNH-HNEXDWKRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Adhatoda vasica	LOTUS Database	35616633
Rubus niveus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

O-glycosyl compounds

Alternative Parents

Substituents

Hexose monosaccharide
O-glycosyl compound
Oxane
Monosaccharide
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Polyol
Acetal
Hydrocarbon derivative
Primary alcohol
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.9	ChemAxon
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	99.38 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	45.42 m³·mol⁻¹	ChemAxon
Polarizability	20.17 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8034836

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9859136

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Gu X, Zhang G, Wang Q, Song J, Li Y, Xia C, Zhang T, Yang L, Sun J, Zhou M: Integrated network pharmacology and hepatic metabolomics to reveal the mechanism of Acanthopanax senticosus against major depressive disorder. Front Cell Dev Biol. 2022 Aug 5;10:900637. doi: 10.3389/fcell.2022.900637. eCollection 2022. [PubMed:35990602 ]
LOTUS database [Link]

Showing NP-Card for (2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol (NP0326991)

MOL for NP0326991 ((2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol)

3D MOL for NP0326991 ((2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol)

3D SDF for NP0326991 ((2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol)

3D-SDF for NP0326991 ((2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol)

PDB for NP0326991 ((2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol)

3D PDB for NP0326991 ((2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol)

SMILES for NP0326991 ((2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol)

INCHI for NP0326991 ((2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol)

Structure for NP0326991 ((2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol)

3D Structure for NP0326991 ((2s,3r,4s,5r,6r)-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol)