NP-MRD: Showing NP-Card for 1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one (NP0325173)

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Record Information

Version

2.0

Created at

2022-09-12 05:43:26 UTC

Updated at

2022-09-12 05:43:26 UTC

NP-MRD ID

NP0325173

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one

Description

1,5-Bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. Fatty acyl glycosides of mono- and disaccharides are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol. 1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one is found in Molineria capitulata and Molineria crassifolia. 1,5-Bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004151518562D          

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M  END

     RDKit          3D

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M  END


  Mrv1533004151518562D          

 36 38  0  0  0  0            999 V2000
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 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 34 36  2  0  0  0  0
 29 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0325173

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(C(CCC(=O)C1=CC=C(O)C(O)=C1)OC1OC(CO)C(O)C(O)C1O)C1=CC=C(O)C(O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C24H30O12/c1-34-23(12-3-5-15(28)17(30)9-12)18(7-6-13(26)11-2-4-14(27)16(29)8-11)35-24-22(33)21(32)20(31)19(10-25)36-24/h2-5,8-9,18-25,27-33H,6-7,10H2,1H3

> <INCHI_KEY>
BIICDNNVQCSUTD-UHFFFAOYSA-N

> <FORMULA>
C24H30O12

> <MOLECULAR_WEIGHT>
510.492

> <EXACT_MASS>
510.173726406

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
50.726998322810246

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
8

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one

> <ALOGPS_LOGP>
0.33

> <JCHEM_LOGP>
0.05125404666666633

> <ALOGPS_LOGS>
-2.75

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.227957397379994

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.87438373589706

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981083554772747

> <JCHEM_POLAR_SURFACE_AREA>
206.6

> <JCHEM_REFRACTIVITY>
122.95080000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.06e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-APR-15         0                                  
HETATM    1  C   UNK     0      -0.976  -0.976   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -0.206  -2.310   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.104  -3.644   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.644  -3.644   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.414  -2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.954  -2.310   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       6.724  -0.976   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       6.724  -3.644   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.954  -4.977   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.724  -6.311   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.264  -6.311   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       9.034  -7.645   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       9.034  -4.977   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      10.574  -4.977   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       8.264  -3.644   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.334  -4.977   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -0.206  -4.977   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -0.976  -3.644   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -2.516  -3.644   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -3.286  -2.310   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -2.516  -0.976   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -3.286  -4.977   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -4.826  -4.977   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -2.516  -6.311   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -3.286  -7.645   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      -0.976  -6.311   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -0.206  -7.645   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       2.104  -0.976   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       1.334   0.357   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.104   1.691   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.644   1.691   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       4.414   3.025   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       4.414   0.357   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       5.954   0.357   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       3.644  -0.976   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   29                                                  
CONECT    4    3    5   17                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   16                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14    9                                                       
CONECT   17    4   18                                                       
CONECT   18   17   19   27                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   23                                                  
CONECT   21   20   22                                                       
CONECT   22   21                                                            
CONECT   23   20   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   18   28                                                  
CONECT   28   27                                                            
CONECT   29    3   30   36                                                  
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   29                                                       
MASTER        0    0    0    0    0    0    0    0   36    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₄H₃₀O₁₂

Average Mass

510.4920 Da

Monoisotopic Mass

510.17373 Da

IUPAC Name

1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one

Traditional Name

1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one

CAS Registry Number

Not Available

SMILES

COC(C(CCC(=O)C1=CC=C(O)C(O)=C1)OC1OC(CO)C(O)C(O)C1O)C1=CC=C(O)C(O)=C1

InChI Identifier

InChI=1S/C24H30O12/c1-34-23(12-3-5-15(28)17(30)9-12)18(7-6-13(26)11-2-4-14(27)16(29)8-11)35-24-22(33)21(32)20(31)19(10-25)36-24/h2-5,8-9,18-25,27-33H,6-7,10H2,1H3

InChI Key

BIICDNNVQCSUTD-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Molineria capitulata	LOTUS Database	35616633
Molineria crassifolia	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. Fatty acyl glycosides of mono- and disaccharides are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acyl glycosides

Direct Parent

Fatty acyl glycosides of mono- and disaccharides

Alternative Parents

Substituents

Fatty acyl glycoside of mono- or disaccharide
Alkyl-phenylketone
Alkyl glycoside
Hexose monosaccharide
Butyrophenone
Glycosyl compound
O-glycosyl compound
Benzylether
Phenylketone
Benzoyl
Catechol
Aryl ketone
Aryl alkyl ketone
1-hydroxy-4-unsubstituted benzenoid
Phenol
1-hydroxy-2-unsubstituted benzenoid
Benzenoid
Oxane
Monocyclic benzene moiety
Monosaccharide
Secondary alcohol
Ketone
Polyol
Organoheterocyclic compound
Acetal
Oxacycle
Dialkyl ether
Ether
Organooxygen compound
Organic oxygen compound
Alcohol
Primary alcohol
Organic oxide
Hydrocarbon derivative
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.33	ALOGPS
logP	0.051	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	7.87	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	8	ChemAxon
Polar Surface Area	206.6 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	122.95 m³·mol⁻¹	ChemAxon
Polarizability	50.73 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one (NP0325173)

MOL for NP0325173 (1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one)

3D MOL for NP0325173 (1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one)

3D SDF for NP0325173 (1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one)

3D-SDF for NP0325173 (1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one)

PDB for NP0325173 (1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one)

3D PDB for NP0325173 (1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one)

SMILES for NP0325173 (1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one)

INCHI for NP0325173 (1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one)

Structure for NP0325173 (1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one)

3D Structure for NP0325173 (1,5-bis(3,4-dihydroxyphenyl)-5-methoxy-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentan-1-one)