NP-MRD: Showing NP-Card for 3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate (NP0324430)

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Record Information

Version

2.0

Created at

2022-09-12 04:30:11 UTC

Updated at

2022-09-12 04:30:12 UTC

NP-MRD ID

NP0324430

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate

Description

3,4,5-Trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate belongs to the class of organic compounds known as other hydroxyeicosapolyenoic acids. These are hydroxyeicosapolyenoic acids which do not belong to the Hydroxyeicosapentaenoic acids, the Hydroxyeicosatetraenoic acids, or the Hydroxyeicosatrienoic acids. 3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate is found in Curvularia andropogonis. Based on a literature review very few articles have been published on 3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122206302D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309122206302D          

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 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 17 16  1  4  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 26 29  1  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 24 33  1  0  0  0  0
 33 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0324430

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCC(O)C=CCCCCCCC=CCCC(=O)OC1OC(CO)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C26H46O8/c1-2-3-4-13-16-20(28)17-14-11-9-7-5-6-8-10-12-15-18-22(29)34-26-25(32)24(31)23(30)21(19-27)33-26/h10,12,14,17,20-21,23-28,30-32H,2-9,11,13,15-16,18-19H2,1H3

> <INCHI_KEY>
IQKISTNYFDXAGD-UHFFFAOYSA-N

> <FORMULA>
C26H46O8

> <MOLECULAR_WEIGHT>
486.646

> <EXACT_MASS>
486.319268441

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
80

> <JCHEM_AVERAGE_POLARIZABILITY>
57.460615121799414

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate

> <JCHEM_LOGP>
3.8121349639999993

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.194602669625898

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.196163563524516

> <JCHEM_PKA_STRONGEST_BASIC>
-1.6174281704258195

> <JCHEM_POLAR_SURFACE_AREA>
136.68

> <JCHEM_REFRACTIVITY>
131.66750000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
19

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0     -12.003 -16.170   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -10.669 -15.400   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -9.336 -16.170   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -8.002 -15.400   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -6.668 -16.170   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.335 -15.400   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -4.001 -16.170   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -4.001 -17.710   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -2.667 -15.400   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.334 -16.170   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.000 -15.400   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.000 -13.860   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.334 -13.090   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.667 -13.860   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.001 -13.090   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.335 -13.860   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.668 -13.090   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.002 -13.860   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.336 -13.090   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       9.336 -11.550   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      10.669 -10.780   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      12.003 -11.550   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      10.669  -9.240   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      12.003  -8.470   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      12.003  -6.930   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      13.337  -6.160   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      13.337  -4.620   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      14.670  -3.850   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      14.670  -6.930   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      16.004  -6.160   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      14.670  -8.470   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      16.004  -9.240   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      13.337  -9.240   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      13.337 -10.780   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25   33                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   29                                                  
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29   26   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   24   34                                                  
CONECT   34   33                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   68    0
END

View in JSmol

Synonyms

Value	Source
3,4,5-Trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoic acid	Generator

Chemical Formula

C₂₆H₄₆O₈

Average Mass

486.6460 Da

Monoisotopic Mass

486.31927 Da

IUPAC Name

3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate

Traditional Name

3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate

CAS Registry Number

Not Available

SMILES

CCCCCCC(O)C=CCCCCCCC=CCCC(=O)OC1OC(CO)C(O)C(O)C1O

InChI Identifier

InChI=1S/C26H46O8/c1-2-3-4-13-16-20(28)17-14-11-9-7-5-6-8-10-12-15-18-22(29)34-26-25(32)24(31)23(30)21(19-27)33-26/h10,12,14,17,20-21,23-28,30-32H,2-9,11,13,15-16,18-19H2,1H3

InChI Key

IQKISTNYFDXAGD-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Curvularia andropogonis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as other hydroxyeicosapolyenoic acids. These are hydroxyeicosapolyenoic acids which do not belong to the Hydroxyeicosapentaenoic acids, the Hydroxyeicosatetraenoic acids, or the Hydroxyeicosatrienoic acids.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Other hydroxyeicosapolyenoic acids

Alternative Parents

Substituents

Hydroxyeicosapolyenoic acid
Fatty acyl glycoside
Fatty acyl glycoside of mono- or disaccharide
Long chain fatty alcohol
Alkyl glycoside
Hexose monosaccharide
Fatty alcohol
Fatty acid ester
Oxane
Monosaccharide
Carboxylic acid ester
Secondary alcohol
Acetal
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Polyol
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Primary alcohol
Carbonyl group
Organooxygen compound
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.81	ChemAxon
pKa (Strongest Acidic)	12.2	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	136.68 Å²	ChemAxon
Rotatable Bond Count	19	ChemAxon
Refractivity	131.67 m³·mol⁻¹	ChemAxon
Polarizability	57.46 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162997219

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate (NP0324430)

MOL for NP0324430 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate)

3D MOL for NP0324430 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate)

3D SDF for NP0324430 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate)

3D-SDF for NP0324430 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate)

PDB for NP0324430 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate)

3D PDB for NP0324430 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate)

SMILES for NP0324430 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate)

INCHI for NP0324430 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate)

Structure for NP0324430 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate)

3D Structure for NP0324430 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 14-hydroxyicosa-4,12-dienoate)