NP-MRD: Showing NP-Card for methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate (NP0324293)

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Record Information

Version

2.0

Created at

2022-09-12 04:17:16 UTC

Updated at

2022-09-12 04:17:16 UTC

NP-MRD ID

NP0324293

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate

Description

Methyl (1R,2S,3R,5R,10S)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]Icosa-13(19),16-diene-17-carboxylate belongs to the class of organic compounds known as yuzurimine-type alkaloids. These are alkaloids (or derivatives thereof) from the genus Daphniphyllum that contain a 22 carbon core, commonly with a C9-C10 double bond, and C-22 is mostly a methyl ester of a carboxyl group. methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate is found in Daphniphyllum calycinum. Based on a literature review very few articles have been published on methyl (1R,2S,3R,5R,10S)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]Icosa-13(19),16-diene-17-carboxylate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122206172D          

 27 32  0  0  1  0            999 V2000
    4.5615   -0.2946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2819    0.4816    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4699    0.6276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9375   -0.0026    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1904    1.4038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6429    2.0932    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4298    2.3809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4011    3.2101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5969    3.4319    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1075    2.7342    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2468    2.5003    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4002    1.6469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5679    1.8193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8726    1.0526    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6373    1.8477    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8225    2.4112    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0163    3.1834    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4477    3.7061    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2544    3.1830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1702    2.2891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8593    1.8355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0215    4.3740    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8398    4.0952    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5739    4.5109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3417    4.2203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7924    3.2383    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5921    3.4411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  6 10  1  0  0  0  0
 11 10  1  1  0  0  0
 11 12  1  0  0  0  0
  5 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  6  0  0  0
 17 16  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 15 20  1  0  0  0  0
 20 21  1  0  0  0  0
 18 22  1  0  0  0  0
 23 22  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
  9 25  1  0  0  0  0
 23 26  1  0  0  0  0
 17 26  1  0  0  0  0
 11 26  1  0  0  0  0
 26 27  1  6  0  0  0
M  END

     RDKit          3D

 56 61  0  0  0  0  0  0  0  0999 V2000
    5.0178    3.4737   -0.0506 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8065    2.7318    0.0961 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7135    1.4588   -0.3967 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7275    0.9869   -0.9726 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5317    0.6094   -0.3056 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3770   -0.5969   -0.7477 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0301   -1.7192   -1.4581 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0116   -2.8396   -1.4242 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8650   -2.3081   -0.6675 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0374   -1.0452   -0.4278 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2074    0.0576    0.0910 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2854    1.1022    0.3638 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7228    0.5407   -0.9643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7568   -0.0402   -2.0187 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5837    1.7055   -0.7240 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6288    2.0129    0.7805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7552    0.7094    1.4651 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9066    0.0265    0.9572 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5572   -1.3084    0.6011 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3023   -1.5328    1.3956 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6018   -2.7886    1.1663 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2884   -3.1328   -0.2637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5752   -0.2358    1.2981 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3416   -0.1672    2.5158 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7207    0.7353    0.0495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0439    1.4250   -1.0802 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2024    0.7799   -2.4097 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7798    3.1012    0.6837 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4664    3.2872   -1.0588 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8736    4.5412    0.1533 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9534   -2.0683   -0.9971 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2364   -1.3729   -2.4896 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4097   -3.7046   -0.8497 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7437   -3.1961   -2.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5176    1.2501    1.4127 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0594    2.0615   -0.1903 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2191    2.6236   -1.2035 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5905    2.5671    0.9865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8417    2.6730    1.1144 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8669    0.8851    2.5742 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4797   -1.4989   -0.4612 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3663   -1.9768    1.0151 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6677   -1.5691    2.4749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1337   -3.6209    1.6312 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3956   -2.7324    1.6930 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1119   -2.9340   -0.9594 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0455   -4.2139   -0.3521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0293   -0.8654    3.3274 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3464   -0.5695    2.2760 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3402    0.8230    2.9972 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4410   -0.0078   -0.4027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3879    1.4217    0.6417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5082    2.4547   -1.1580 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1809    1.1287   -2.8499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4280    1.1748   -3.1114 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1306   -0.3031   -2.4344 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 11 13  1  6
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 20 23  1  0
 23 24  1  1
 18 25  1  0
 25 26  1  0
 26 27  1  0
 12  5  1  0
 26 15  1  0
 10  6  1  0
 23 11  1  0
 22  9  1  0
 23 17  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  7 31  1  0
  7 32  1  0
  8 33  1  0
  8 34  1  0
 12 35  1  0
 12 36  1  0
 15 37  1  6
 16 38  1  0
 16 39  1  0
 17 40  1  1
 19 41  1  0
 19 42  1  0
 20 43  1  1
 21 44  1  0
 21 45  1  0
 22 46  1  0
 22 47  1  0
 24 48  1  0
 24 49  1  0
 24 50  1  0
 25 51  1  0
 25 52  1  0
 26 53  1  6
 27 54  1  0
 27 55  1  0
 27 56  1  0
M  END


  Mrv1652309122206172D          

 27 32  0  0  1  0            999 V2000
    4.5615   -0.2946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2819    0.4816    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4699    0.6276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9375   -0.0026    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1904    1.4038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6429    2.0932    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4298    2.3809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4011    3.2101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5969    3.4319    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1075    2.7342    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2468    2.5003    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4002    1.6469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5679    1.8193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8726    1.0526    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6373    1.8477    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8225    2.4112    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0163    3.1834    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4477    3.7061    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2544    3.1830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1702    2.2891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8593    1.8355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0215    4.3740    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8398    4.0952    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5739    4.5109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3417    4.2203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7924    3.2383    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5921    3.4411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  6 10  1  0  0  0  0
 11 10  1  1  0  0  0
 11 12  1  0  0  0  0
  5 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  6  0  0  0
 17 16  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 15 20  1  0  0  0  0
 20 21  1  0  0  0  0
 18 22  1  0  0  0  0
 23 22  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
  9 25  1  0  0  0  0
 23 26  1  0  0  0  0
 17 26  1  0  0  0  0
 11 26  1  0  0  0  0
 26 27  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0324293

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=C2CCC3=C2[C@@]2(C1)C(=O)[C@@H]1C[C@H]4N(C[C@@H](CC3)[C@@]24C)CC1C

> <INCHI_IDENTIFIER>
InChI=1S/C23H29NO3/c1-12-10-24-11-14-6-4-13-5-7-15-17(21(26)27-3)9-23(19(13)15)20(25)16(12)8-18(24)22(14,23)2/h12,14,16,18H,4-11H2,1-3H3/t12?,14-,16-,18-,22-,23+/m1/s1

> <INCHI_KEY>
ABIPGLGIPJKDMN-GECLAARYSA-N

> <FORMULA>
C23H29NO3

> <MOLECULAR_WEIGHT>
367.489

> <EXACT_MASS>
367.214743798

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
56

> <JCHEM_AVERAGE_POLARIZABILITY>
41.00337381994644

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (1R,2S,3R,5R,10S)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1^{1,5}.0^{2,10}.0^{3,8}.0^{16,19}]icosa-13(19),16-diene-17-carboxylate

> <JCHEM_LOGP>
2.741112742333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.932433852887723

> <JCHEM_PKA_STRONGEST_BASIC>
10.959866658331455

> <JCHEM_POLAR_SURFACE_AREA>
46.61000000000001

> <JCHEM_REFRACTIVITY>
103.8873

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1R,2S,3R,5R,10S)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1^{1,5}.0^{2,10}.0^{3,8}.0^{16,19}]icosa-13(19),16-diene-17-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       8.515  -0.550   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       7.993   0.899   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       6.477   1.171   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       5.483  -0.005   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       5.955   2.620   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.800   3.907   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.269   4.444   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.215   5.992   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.714   6.406   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.801   5.104   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.194   4.667   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.480   3.074   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.927   3.396   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       3.495   1.965   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       1.190   3.449   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.535   4.501   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.897   5.942   0.000  0.00  0.00           C+0
HETATM   18  N   UNK     0       0.836   6.918   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0      -0.475   5.942   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.318   4.273   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.604   3.426   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.907   8.165   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.434   7.644   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.805   8.420   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.238   7.878   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.346   6.045   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.839   6.423   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   12                                                  
CONECT    6    5    7   10                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   25                                                  
CONECT   10    9    6   11                                                  
CONECT   11   10   12   13   26                                             
CONECT   12   11    5                                                       
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   20                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   26                                                  
CONECT   18   17   19   22                                                  
CONECT   19   18   20                                                       
CONECT   20   19   15   21                                                  
CONECT   21   20                                                            
CONECT   22   18   23                                                       
CONECT   23   22   24   26                                                  
CONECT   24   23   25                                                       
CONECT   25   24    9                                                       
CONECT   26   23   17   11   27                                             
CONECT   27   26                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   64    0
END

View in JSmol

Synonyms

Value	Source
Methyl (1R,2S,3R,5R,10S)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1,.0,.0,.0,]icosa-13(19),16-diene-17-carboxylic acid	Generator

Chemical Formula

C₂₃H₂₉NO₃

Average Mass

367.4890 Da

Monoisotopic Mass

367.21474 Da

IUPAC Name

methyl (1R,2S,3R,5R,10S)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1^{1,5}.0^{2,10}.0^{3,8}.0^{16,19}]icosa-13(19),16-diene-17-carboxylate

Traditional Name

methyl (1R,2S,3R,5R,10S)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1^{1,5}.0^{2,10}.0^{3,8}.0^{16,19}]icosa-13(19),16-diene-17-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1=C2CCC3=C2[C@@]2(C1)C(=O)[C@@H]1C[C@H]4N(C[C@@H](CC3)[C@@]24C)CC1C

InChI Identifier

InChI=1S/C23H29NO3/c1-12-10-24-11-14-6-4-13-5-7-15-17(21(26)27-3)9-23(19(13)15)20(25)16(12)8-18(24)22(14,23)2/h12,14,16,18H,4-11H2,1-3H3/t12?,14-,16-,18-,22-,23+/m1/s1

InChI Key

ABIPGLGIPJKDMN-GECLAARYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Daphniphyllum calycinum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as yuzurimine-type alkaloids. These are alkaloids (or derivatives thereof) from the genus Daphniphyllum that contain a 22 carbon core, commonly with a C9-C10 double bond, and C-22 is mostly a methyl ester of a carboxyl group.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Yuzurimine-type alkaloids

Sub Class

Not Available

Direct Parent

Yuzurimine-type alkaloids

Alternative Parents

Substituents

Yuzurimine-type alkaloid
Indolizidine
Indole or derivatives
N-alkylpyrrolidine
Piperidine
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Methyl ester
Pyrrolidine
Tertiary aliphatic amine
Tertiary amine
Ketone
Carboxylic acid ester
Amino acid or derivatives
Azacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Amine
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.74	ChemAxon
pKa (Strongest Acidic)	18.93	ChemAxon
pKa (Strongest Basic)	10.96	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	46.61 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	103.89 m³·mol⁻¹	ChemAxon
Polarizability	41 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

138114021

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate (NP0324293)

MOL for NP0324293 (methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate)

3D MOL for NP0324293 (methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate)

3D SDF for NP0324293 (methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate)

3D-SDF for NP0324293 (methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate)

PDB for NP0324293 (methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate)

3D PDB for NP0324293 (methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate)

SMILES for NP0324293 (methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate)

INCHI for NP0324293 (methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate)

Structure for NP0324293 (methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate)

3D Structure for NP0324293 (methyl (1r,2s,3r,5r,10s)-2,6-dimethyl-20-oxo-8-azahexacyclo[11.5.1.1¹,⁵.0²,¹⁰.0³,⁸.0¹⁶,¹⁹]icosa-13(19),16-diene-17-carboxylate)