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Record Information
Version2.0
Created at2022-09-12 04:07:02 UTC
Updated at2022-09-12 04:07:02 UTC
NP-MRD IDNP0324193
Secondary Accession NumbersNone
Natural Product Identification
Common Name(3s,3ar,4s,6s,6ar,10s,12s,13r,15as)-3-benzyl-1,6-dihydroxy-13-methoxy-4,10,12-trimethyl-5-methylidene-15-oxo-3h,3ah,4h,6h,6ah,9h,10h,11h,13h,14h-cycloundeca[d]isoindol-12-yl acetate
DescriptionDaldinin belongs to the class of organic compounds known as cytochalasans. These are fungal metabolites structurally characterized by the presence of an isoindolone nucleus fused to a macrocyclic ring, which can either a lactone, as in cytochalasin B, a carbonate, as in cytochalasin E, or a carbocycle, as in cytochalasin D, H, and K. (3s,3ar,4s,6s,6ar,10s,12s,13r,15as)-3-benzyl-1,6-dihydroxy-13-methoxy-4,10,12-trimethyl-5-methylidene-15-oxo-3h,3ah,4h,6h,6ah,9h,10h,11h,13h,14h-cycloundeca[d]isoindol-12-yl acetate is found in Daldinia concentrica. (3s,3ar,4s,6s,6ar,10s,12s,13r,15as)-3-benzyl-1,6-dihydroxy-13-methoxy-4,10,12-trimethyl-5-methylidene-15-oxo-3h,3ah,4h,6h,6ah,9h,10h,11h,13h,14h-cycloundeca[d]isoindol-12-yl acetate was first documented in 2008 (PMID: 18503188). Based on a literature review a small amount of articles have been published on Daldinin (PMID: 19769341) (PMID: 34519434) (PMID: 33670169) (PMID: 34334519).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC31H41NO6
Average Mass523.6700 Da
Monoisotopic Mass523.29339 Da
IUPAC NameNot Available
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
CO[C@@H]1CC(=O)[C@]23[C@H]([C@H](CC4=CC=CC=C4)N=C2O)[C@H](C)C(=C)[C@@H](O)[C@@H]3\C=C\C[C@H](C)C[C@]1(C)OC(C)=O
InChI Identifier
InChI=1S/C31H41NO6/c1-18-11-10-14-23-28(35)20(3)19(2)27-24(15-22-12-8-7-9-13-22)32-29(36)31(23,27)25(34)16-26(37-6)30(5,17-18)38-21(4)33/h7-10,12-14,18-19,23-24,26-28,35H,3,11,15-17H2,1-2,4-6H3,(H,32,36)/b14-10+/t18-,19+,23-,24-,26+,27-,28+,30-,31+/m0/s1
InChI KeyPOXWDDFZAWCGIG-CHZWMTGQSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Daldinia concentricaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cytochalasans. These are fungal metabolites structurally characterized by the presence of an isoindolone nucleus fused to a macrocyclic ring, which can either a lactone, as in cytochalasin B, a carbonate, as in cytochalasin E, or a carbocycle, as in cytochalasin D, H, and K.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassCytochalasans
Sub ClassNot Available
Direct ParentCytochalasans
Alternative Parents
Substituents
  • Cytochalasan
  • Carbocyclic cytochalasan skeleton
  • Isoindolone
  • Isoindole or derivatives
  • Isoindole
  • Isoindoline
  • Benzenoid
  • 2-pyrrolidone
  • Pyrrolidone
  • Monocyclic benzene moiety
  • Pyrrolidine
  • Cyclic alcohol
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Lactam
  • Ketone
  • Carboxylic acid ester
  • Carboxamide group
  • Azacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00035571
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146683513
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Shao HJ, Qin XD, Dong ZJ, Zhang HB, Liu JK: Induced daldinin A, B, C with a new skeleton from cultures of the ascomycete Daldinia concentrica. J Antibiot (Tokyo). 2008 Mar;61(3):115-9. doi: 10.1038/ja.2008.119. [PubMed:18503188 ]
  2. Lu Z, Wang Y, Miao C, Liu P, Hong K, Zhu W: Sesquiterpenoids and benzofuranoids from the marine-derived fungus Aspergillus ustus 094102. J Nat Prod. 2009 Oct;72(10):1761-7. doi: 10.1021/np900268z. [PubMed:19769341 ]
  3. Zhang H, Lei XX, Shao S, Zhou X, Li Y, Yang B: Azaphilones and Meroterpenoids from the Soft Coral-Derived Fungus Penicillium glabrum glmu003. Chem Biodivers. 2021 Sep 14:e2100663. doi: 10.1002/cbdv.202100663. [PubMed:34519434 ]
  4. Lambert C, Pourmoghaddam MJ, Cedeno-Sanchez M, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stradal TEB, Stadler M: Resolution of the Hypoxylon fuscum Complex (Hypoxylaceae, Xylariales) and Discovery and Biological Characterization of Two of Its Prominent Secondary Metabolites. J Fungi (Basel). 2021 Feb 11;7(2):131. doi: 10.3390/jof7020131. [PubMed:33670169 ]
  5. Sun Q, Hu S, Song Y, Zhu R, Li L, Li J, Zhang T, Gao Q, Wang Y, Fang L: Total Synthesis, Discovery and Biological Evaluation of Daldinin A Derivatives for Improving Hyperglycemia-Induced Endothelial Cell Death. Chem Pharm Bull (Tokyo). 2021;69(8):760-767. doi: 10.1248/cpb.c21-00211. [PubMed:34334519 ]
  6. LOTUS database [Link]