NP-MRD: Showing NP-Card for (2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid (NP0323906)

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Record Information

Version

2.0

Created at

2022-09-12 03:38:21 UTC

Updated at

2022-09-12 03:38:21 UTC

NP-MRD ID

NP0323906

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid

Description

Soyacerebroside II belongs to the class of organic compounds known as glycosyl-n-acylsphingosines. Glycosyl-N-acylsphingosines are compounds containing a sphingosine linked to a simple glucosyl moiety. (2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid is found in Cibotium barometz. (2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid was first documented in 2014 (PMID: 24761642). Based on a literature review very few articles have been published on Soyacerebroside II.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122205382D          

 50 50  0  0  1  0            999 V2000
  -12.1460    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1460    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4315    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4315    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7171    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7171    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0026   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0026   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2881   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2881   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5737   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8592   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1447   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4302   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -2.0625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.0013   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -4.5375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8579   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -5.7750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -7.0125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -6.1875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5724   -7.0125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -5.7750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0013   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -4.9500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.0013   -4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.0625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  1  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 20  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  6  0  0  0
 24 25  1  0  0  0  0
 23 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 28 29  1  6  0  0  0
 28 30  1  0  0  0  0
 21 30  1  0  0  0  0
 30 31  1  1  0  0  0
 32 18  1  4  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  6  0  0  0
 35 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
M  END

     RDKit          3D

125125  0  0  0  0  0  0  0  0999 V2000
  -12.4527    5.0160    2.3966 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5144    4.3344    1.5667 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9196    3.1878    0.7608 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8555    3.7666   -0.1453 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2444    2.6773   -0.9690 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6036    1.6247   -0.1057 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9772    0.5249   -0.9198 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8975    0.9744   -1.8462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7358    1.6305   -1.1204 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0911    0.7440   -0.1622 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8314    0.3991   -0.2428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9511    0.8844   -1.3240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7757    1.6798   -0.7819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9590    0.8044    0.1292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6904    0.5918   -0.1853 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8760   -0.2691    0.7048 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5793   -0.6614    1.8272 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5535   -1.5289   -0.1177 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8587   -2.0854   -0.5940 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7592   -3.2243   -1.3444 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2671   -4.3486   -0.7651 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1653   -5.4300   -0.8192 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8630   -6.3496    0.1828 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6027   -5.9452    1.4216 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3263   -6.8504    2.4668 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3791   -6.3710    0.4825 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0650   -7.6800    0.8942 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4411   -6.1006   -0.7577 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7601   -5.9117   -0.3577 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0111   -4.8605   -1.4960 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4069   -5.1420   -2.7981 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2251   -2.3684    0.7169 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4785   -2.3189    0.7994 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0916   -3.2318    1.6794 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4039   -1.4138    0.0794 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0579   -2.1901   -0.8644 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3167   -0.6902    0.9978 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2648    0.3060    0.3753 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2081   -0.2521   -0.6090 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2098    0.6200   -1.2336 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3533    1.2009   -0.4999 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0346    2.0181    0.6617 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1272    2.7703    1.3483 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2447    2.1033    1.9858 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1748    1.2387    1.2304 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8618    1.9071    0.0808 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6796    3.0764    0.5479 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3698    3.7490   -0.6194 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2983    2.8221   -1.3519 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3802    2.3015   -0.4377 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9831    5.6514    3.1483 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8881    5.7137    1.7428 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7532    4.2959    2.8703 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3577    3.9940    2.1893 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8888    5.0831    0.8372 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5107    2.4756    1.4900 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7232    2.6833    0.2019 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1240    4.2711    0.5209 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2978    4.5235   -0.8209 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6027    3.0312   -1.7763 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1083    2.1610   -1.4861 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3837    1.1076    0.5278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8818    2.0575    0.5886 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7903    0.0903   -1.5485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6483   -0.2629   -0.2103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5419    0.1116   -2.4570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3272    1.6833   -2.5797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2068    2.4646   -0.4963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1268    2.1480   -1.8441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6716    0.3242    0.6903 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3891   -0.2848    0.5219 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4223    1.3173   -2.1915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4545   -0.0688   -1.7231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1762    2.0074   -1.6540 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0770    2.5495   -0.2019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4602    0.3959    0.9955 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2808    1.0468   -1.0753 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0429    0.2934    0.9477 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0381   -0.4530    2.6217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0044   -1.1416   -1.0083 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5065   -2.3383    0.2875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4309   -1.3434   -1.2075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0478   -4.1912    0.2930 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1955   -7.3638   -0.1063 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2664   -4.9532    1.8050 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6933   -5.9056    1.2829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9060   -6.6234    3.2160 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1000   -5.7130    1.3184 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9262   -7.7662    0.7291 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4231   -6.9941   -1.4171 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3703   -5.8540   -1.1224 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7500   -4.0582   -1.4660 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2996   -5.5484   -2.7653 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7160   -3.9034    1.2603 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8116   -0.6040   -0.4622 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3667   -3.0517   -0.4941 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7411   -0.1025    1.7700 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8879   -1.4514    1.6128 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6410    0.9367    1.1696 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5394    1.0178   -0.1876 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7544   -1.1226   -0.1149 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6032   -0.7940   -1.4171 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6394   -0.0073   -2.1106 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7108    1.4547   -1.8432 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0305    0.3257   -0.2829 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8877    1.8624   -1.2727 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1700    2.6670    0.4929 H   0  0  0  0  0  0  0  0  0  0  0  0
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    9.8208    0.2190    1.0233 H   0  0  0  0  0  0  0  0  0  0  0  0
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   10.2120    2.1381   -0.7731 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0713    3.8576    1.0445 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1 53  1  0
M  END


  Mrv1652309122205382D          

 50 50  0  0  1  0            999 V2000
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   -4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -4.5375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8579   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -5.7750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -7.0125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.5724   -7.0125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -5.7750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0013   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -4.9500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.0013   -4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.1434   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  1  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 20  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  6  0  0  0
 24 25  1  0  0  0  0
 23 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 28 29  1  6  0  0  0
 28 30  1  0  0  0  0
 21 30  1  0  0  0  0
 30 31  1  1  0  0  0
 32 18  1  4  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  6  0  0  0
 35 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0323906

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCCC[C@@H](O)C(O)=NC(CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)[C@H](O)\C=C\CC\C=C/CCCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C40H75NO9/c1-3-5-7-9-11-13-15-17-19-20-22-24-26-28-33(43)32(31-49-40-38(47)37(46)36(45)35(30-42)50-40)41-39(48)34(44)29-27-25-23-21-18-16-14-12-10-8-6-4-2/h19-20,26,28,32-38,40,42-47H,3-18,21-25,27,29-31H2,1-2H3,(H,41,48)/b20-19-,28-26+/t32?,33-,34-,35-,36-,37+,38-,40+/m1/s1

> <INCHI_KEY>
HOMYIYLRRDTKAA-RZGXGQPASA-N

> <FORMULA>
C40H75NO9

> <MOLECULAR_WEIGHT>
714.038

> <EXACT_MASS>
713.544182999

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
125

> <JCHEM_AVERAGE_POLARIZABILITY>
85.79389502908198

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2-hydroxy-N-[(3R,4E,8Z)-3-hydroxy-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid

> <JCHEM_LOGP>
8.68113604766667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.203428504857106

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.9775095473787987

> <JCHEM_PKA_STRONGEST_BASIC>
1.722004743204488

> <JCHEM_POLAR_SURFACE_AREA>
172.43

> <JCHEM_REFRACTIVITY>
201.31950000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
32

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2-hydroxy-N-[(3R,4E,8Z)-3-hydroxy-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0     -22.673   6.930   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -22.673   5.390   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -21.339   4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -21.339   3.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -20.005   2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -20.005   0.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -18.672  -0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -18.672  -1.540   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -17.338  -2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -17.338  -3.850   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -16.004  -4.620   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -14.670  -3.850   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -13.337  -4.620   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0     -12.003  -3.850   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0     -10.669  -4.620   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -9.336  -3.850   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -9.336  -2.310   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -8.002  -6.160   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -6.668  -6.930   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -6.668  -8.470   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -5.335  -9.240   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -5.335 -10.780   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -4.001 -11.550   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -4.001 -13.090   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -6.668 -11.550   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -6.668 -13.090   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -8.002 -10.780   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -9.336 -11.550   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -8.002  -9.240   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -9.336  -8.470   0.000  0.00  0.00           O+0
HETATM   32  N   UNK     0      -6.668  -3.850   0.000  0.00  0.00           N+0
HETATM   33  C   UNK     0      -5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -5.335  -6.160   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -4.001  -3.850   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      -4.001  -2.310   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -1.334  -3.850   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       1.334  -3.850   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       4.001  -3.850   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       6.668  -3.850   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0       9.336  -3.850   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      10.669  -4.620   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      12.003  -3.850   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      13.337  -4.620   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      14.670  -3.850   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   32                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   30                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   26                                                  
CONECT   24   23   25                                                       
CONECT   25   24                                                            
CONECT   26   23   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   21   31                                                  
CONECT   31   30                                                            
CONECT   32   18   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49                                                            
MASTER        0    0    0    0    0    0    0    0   50    0  100    0
END

View in JSmol

Synonyms

Value	Source
Soya-cerebroside II	MeSH

Chemical Formula

C₄₀H₇₅NO₉

Average Mass

714.0380 Da

Monoisotopic Mass

713.54418 Da

IUPAC Name

(2R)-2-hydroxy-N-[(3R,4E,8Z)-3-hydroxy-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid

Traditional Name

(2R)-2-hydroxy-N-[(3R,4E,8Z)-3-hydroxy-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCC[C@@H](O)C(O)=NC(CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)[C@H](O)\C=C\CC\C=C/CCCCCCCCC

InChI Identifier

InChI=1S/C40H75NO9/c1-3-5-7-9-11-13-15-17-19-20-22-24-26-28-33(43)32(31-49-40-38(47)37(46)36(45)35(30-42)50-40)41-39(48)34(44)29-27-25-23-21-18-16-14-12-10-8-6-4-2/h19-20,26,28,32-38,40,42-47H,3-18,21-25,27,29-31H2,1-2H3,(H,41,48)/b20-19-,28-26+/t32?,33-,34-,35-,36-,37+,38-,40+/m1/s1

InChI Key

HOMYIYLRRDTKAA-RZGXGQPASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cibotium barometz	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as glycosyl-n-acylsphingosines. Glycosyl-N-acylsphingosines are compounds containing a sphingosine linked to a simple glucosyl moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Sphingolipids

Sub Class

Glycosphingolipids

Direct Parent

Glycosyl-N-acylsphingosines

Alternative Parents

Substituents

Glycosyl-n-acylsphingosine
Fatty acyl glycoside
Fatty acyl glycoside of mono- or disaccharide
Alkyl glycoside
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Fatty amide
Fatty acyl
Monosaccharide
N-acyl-amine
Oxane
Carboxamide group
Secondary carboxylic acid amide
Secondary alcohol
Acetal
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Polyol
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Alcohol
Organic oxygen compound
Organic nitrogen compound
Primary alcohol
Carbonyl group
Organooxygen compound
Organonitrogen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	8.68	ChemAxon
pKa (Strongest Acidic)	3.98	ChemAxon
pKa (Strongest Basic)	1.72	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	172.43 Å²	ChemAxon
Rotatable Bond Count	32	ChemAxon
Refractivity	201.32 m³·mol⁻¹	ChemAxon
Polarizability	85.79 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4952693

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6450042

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wang CQ, Wang L, Li BJ, Fan CL, Huang XJ, Ye WC: [Chemical constituents from leaves of Ilex latifolia]. Zhongguo Zhong Yao Za Zhi. 2014 Jan;39(2):258-61. [PubMed:24761642 ]
LOTUS database [Link]

Showing NP-Card for (2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid (NP0323906)

MOL for NP0323906 ((2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid)

3D MOL for NP0323906 ((2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid)

3D SDF for NP0323906 ((2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid)

3D-SDF for NP0323906 ((2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid)

PDB for NP0323906 ((2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid)

3D PDB for NP0323906 ((2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid)

SMILES for NP0323906 ((2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid)

INCHI for NP0323906 ((2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid)

Structure for NP0323906 ((2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid)

3D Structure for NP0323906 ((2r)-2-hydroxy-n-[(3r,4e,8z)-3-hydroxy-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadeca-4,8-dien-2-yl]hexadecanimidic acid)