NP-MRD: Showing NP-Card for (5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid (NP0323694)

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Record Information

Version

2.0

Created at

2022-09-12 03:17:32 UTC

Updated at

2022-09-12 03:17:32 UTC

NP-MRD ID

NP0323694

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid

Description

(5R,6R)-3-[(R)-(E)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1S)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]Hept-2-ene-2-carboxylic acid belongs to the class of organic compounds known as carbapenems. These are beta-lactam derivatives in which the beta-lactam ring shares the nitrogen atom with a pyrrole-2-carboxylic acid. (5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid is found in Streptomyces olivaceus. Based on a literature review very few articles have been published on (5R,6R)-3-[(R)-(E)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1S)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]Hept-2-ene-2-carboxylic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122205172D          

 26 27  0  0  1  0            999 V2000
    4.4219   -1.5131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0094   -0.7986    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1844   -0.7986    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4219   -0.0842    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0094    0.6303    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1844    0.6303    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7719    1.3448    0.0000 S   0  3  1  0  0  0  0  0  0  0  0  0
    3.1844    2.0593    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    1.9469    1.3448    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4620    0.6773    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7169   -0.1073    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1649   -0.7204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5239   -0.2788    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6773    0.9323    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1477    0.9323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7310    0.3489    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1477    1.7573    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7310    2.3406    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5279    2.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5175    3.1375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1009    3.7209    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6842    4.3043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5175    4.3043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6842    3.1375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6773    1.7573    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4620    2.0122    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  4  5  1  4  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 10 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  1  0  0  0
 18 19  1  6  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  2  0  0  0  0
 21 24  1  0  0  0  0
 17 25  1  0  0  0  0
 25 14  1  1  0  0  0
 25 26  1  0  0  0  0
  9 26  1  0  0  0  0
M  CHG  2   7   1   8  -1
M  END

     RDKit          3D

 42 43  0  0  0  0  0  0  0  0999 V2000
    5.3665   -0.2870    0.4618 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1954    0.9746    1.2234 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2568    1.8592    1.3343 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0876    1.2932    1.7971 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9668    0.4199    1.7139 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1895    0.1409    2.7292 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8051   -0.9482    2.5913 S   0  0  0  0  0  3  0  0  0  0  0  0
   -0.3069   -0.3236    3.7126 O   0  0  0  0  0  1  0  0  0  0  0  0
    0.0830   -0.5622    1.0274 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0831   -1.4592    0.0717 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2879   -2.8659    0.1458 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8202   -3.3747    1.1642 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0570   -3.7030   -0.9349 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6961   -0.8301   -1.0741 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3844   -0.5115   -2.2652 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7002   -1.1968   -3.2758 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5335    0.8832   -1.7834 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8924    1.1161   -1.2165 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0141    2.2714   -0.2775 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4250   -0.0669   -0.6586 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7630   -0.6233   -1.4681 S   0  0  0  0  0  6  0  0  0  0  0  0
   -5.0973    0.2786   -2.6224 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9573   -0.7285   -0.5543 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5054   -2.1649   -2.1189 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3894    0.5852   -0.9224 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4314    0.7548    0.5447 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1697   -0.1578   -0.6217 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3600   -0.7303    0.5925 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6285   -1.0649    0.8121 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7724    2.0162    2.1824 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7242   -0.0561    0.7561 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4484    0.6239    3.6754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0561   -3.3841   -1.8890 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3514    1.6513   -2.5864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5690    1.3350   -2.0960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7452    3.0506   -0.6647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0638    2.8147   -0.2067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4642    2.0051    0.7194 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3180   -2.3400   -2.6933 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5750    0.8883   -1.3849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3941    0.8996    1.0198 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3472    1.5171    0.8344 H   0  0  0  0  0  0  0  0  0  0  0  0
 19 18  1  0
 18 20  1  0
 20 21  1  0
 21 24  1  0
 21 22  2  0
 21 23  2  0
 18 17  1  0
 17 25  1  0
 25 26  1  0
 26  9  1  0
  9  7  1  0
  7  8  1  1
  7  6  1  0
  6  5  2  0
  5  4  1  0
  4  2  2  0
  2  1  1  0
  2  3  1  0
  9 10  2  0
 10 14  1  0
 14 15  1  0
 15 16  2  0
 10 11  1  0
 11 13  1  0
 11 12  2  0
 15 17  1  0
 14 25  1  0
 19 36  1  0
 19 37  1  0
 19 38  1  0
 18 35  1  6
 24 39  1  0
 17 34  1  6
 25 40  1  6
 26 41  1  0
 26 42  1  0
  6 32  1  0
  5 31  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  3 30  1  0
 13 33  1  0
M  CHG  2   7   1   8  -1
M  END


  Mrv1652309122205172D          

 26 27  0  0  1  0            999 V2000
    4.4219   -1.5131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0094   -0.7986    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1844   -0.7986    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4219   -0.0842    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0094    0.6303    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1844    0.6303    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7719    1.3448    0.0000 S   0  3  1  0  0  0  0  0  0  0  0  0
    3.1844    2.0593    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    1.9469    1.3448    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4620    0.6773    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7169   -0.1073    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1649   -0.7204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5239   -0.2788    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6773    0.9323    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1477    0.9323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7310    0.3489    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1477    1.7573    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7310    2.3406    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5279    2.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5175    3.1375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1009    3.7209    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6842    4.3043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5175    4.3043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6842    3.1375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6773    1.7573    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4620    2.0122    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  4  5  1  4  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 10 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  1  0  0  0
 18 19  1  6  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  2  0  0  0  0
 21 24  1  0  0  0  0
 17 25  1  0  0  0  0
 25 14  1  1  0  0  0
 25 26  1  0  0  0  0
  9 26  1  0  0  0  0
M  CHG  2   7   1   8  -1
M  END
> <DATABASE_ID>
NP0323694

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](OS(O)(=O)=O)[C@H]1[C@H]2CC([S@+]([O-])\C=C\N=C(C)O)=C(N2C1=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C13H16N2O9S2/c1-6(24-26(21,22)23)10-8-5-9(25(20)4-3-14-7(2)16)11(13(18)19)15(8)12(10)17/h3-4,6,8,10H,5H2,1-2H3,(H,14,16)(H,18,19)(H,21,22,23)/b4-3+/t6-,8+,10-,25+/m0/s1

> <INCHI_KEY>
OIUMWDNCAIKVGD-YCAVXRAHSA-N

> <FORMULA>
C13H16N2O9S2

> <MOLECULAR_WEIGHT>
408.4

> <EXACT_MASS>
408.029722451

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
36.550099976402095

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5R,6R)-3-[(R)-(E)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1S)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid

> <JCHEM_LOGP>
-4.054259203426383

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
2.063344184839645

> <JCHEM_PKA_STRONGEST_ACIDIC>
-2.033433539386844

> <JCHEM_PKA_STRONGEST_BASIC>
3.4700460814687633

> <JCHEM_POLAR_SURFACE_AREA>
170.87

> <JCHEM_REFRACTIVITY>
89.4553

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(5R,6R)-3-[(R)-(E)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1S)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       8.254  -2.824   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.484  -1.491   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       5.944  -1.491   0.000  0.00  0.00           O+0
HETATM    4  N   UNK     0       8.254  -0.157   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       7.484   1.177   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.944   1.177   0.000  0.00  0.00           C+0
HETATM    7  S   UNK     0       5.174   2.510   0.000  0.00  0.00           S+1
HETATM    8  O   UNK     0       5.944   3.844   0.000  0.00  0.00           O-1
HETATM    9  C   UNK     0       3.634   2.510   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.729   1.264   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.205  -0.200   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.174  -1.345   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       4.711  -0.520   0.000  0.00  0.00           O+0
HETATM   14  N   UNK     0       1.264   1.740   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0      -0.276   1.740   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -1.365   0.651   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -0.276   3.280   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.365   4.369   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -2.852   3.971   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -0.966   5.857   0.000  0.00  0.00           O+0
HETATM   21  S   UNK     0      -2.055   6.946   0.000  0.00  0.00           S+0
HETATM   22  O   UNK     0      -3.144   8.035   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      -0.966   8.035   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      -3.144   5.857   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       1.264   3.280   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.729   3.756   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   26                                                  
CONECT   10    9   11   14                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14   10   15   25                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   25                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22   23   24                                             
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   21                                                            
CONECT   25   17   14   26                                                  
CONECT   26   25    9                                                       
MASTER        0    0    0    0    0    0    0    0   26    0   54    0
END

View in JSmol

Synonyms

Value	Source
(5R,6R)-3-[(R)-(e)-2-[(1-Hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1S)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylate	Generator
(5R,6R)-3-[(R)-(e)-2-[(1-Hydroxyethylidene)amino]ethenesulphinyl]-7-oxo-6-[(1S)-1-(sulphooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylate	Generator
(5R,6R)-3-[(R)-(e)-2-[(1-Hydroxyethylidene)amino]ethenesulphinyl]-7-oxo-6-[(1S)-1-(sulphooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid	Generator

Chemical Formula

C₁₃H₁₆N₂O₉S₂

Average Mass

408.4000 Da

Monoisotopic Mass

408.02972 Da

IUPAC Name

(5R,6R)-3-[(R)-(E)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1S)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid

Traditional Name

(5R,6R)-3-[(R)-(E)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1S)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

C[C@H](OS(O)(=O)=O)[C@H]1[C@H]2CC([S@+]([O-])\C=C\N=C(C)O)=C(N2C1=O)C(O)=O

InChI Identifier

InChI=1S/C13H16N2O9S2/c1-6(24-26(21,22)23)10-8-5-9(25(20)4-3-14-7(2)16)11(13(18)19)15(8)12(10)17/h3-4,6,8,10H,5H2,1-2H3,(H,14,16)(H,18,19)(H,21,22,23)/b4-3+/t6-,8+,10-,25+/m0/s1

InChI Key

OIUMWDNCAIKVGD-YCAVXRAHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces olivaceus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as carbapenems. These are beta-lactam derivatives in which the beta-lactam ring shares the nitrogen atom with a pyrrole-2-carboxylic acid.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactams

Sub Class

Beta lactams

Direct Parent

Carbapenems

Alternative Parents

Substituents

Carbapenem
Alpha-amino acid or derivatives
Pyrroline carboxylic acid
Pyrroline carboxylic acid or derivatives
Azepine
Sulfuric acid monoester
Sulfate-ester
Alkyl sulfate
Sulfuric acid ester
Organic sulfuric acid or derivatives
Pyrroline
Tertiary carboxylic acid amide
Sulfoxide
Azetidine
Carboxamide group
Sulfinyl compound
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Carboximidic acid
Carboximidic acid derivative
Carboxylic acid derivative
Azacycle
Monocarboxylic acid or derivatives
Carboxylic acid
Organic oxygen compound
Organonitrogen compound
Organooxygen compound
Organosulfur compound
Organic oxide
Carbonyl group
Organopnictogen compound
Hydrocarbon derivative
Organic nitrogen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-4.1	ChemAxon
pKa (Strongest Acidic)	-2	ChemAxon
pKa (Strongest Basic)	3.47	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	170.87 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	89.46 m³·mol⁻¹	ChemAxon
Polarizability	36.55 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162991812

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid (NP0323694)

MOL for NP0323694 ((5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid)

3D MOL for NP0323694 ((5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid)

3D SDF for NP0323694 ((5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid)

3D-SDF for NP0323694 ((5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid)

PDB for NP0323694 ((5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid)

3D PDB for NP0323694 ((5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid)

SMILES for NP0323694 ((5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid)

INCHI for NP0323694 ((5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid)

Structure for NP0323694 ((5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid)

3D Structure for NP0323694 ((5r,6r)-3-[(r)-(1e)-2-[(1-hydroxyethylidene)amino]ethenesulfinyl]-7-oxo-6-[(1s)-1-(sulfooxy)ethyl]-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid)