NP-MRD: Showing NP-Card for methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate (NP0323610)

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Record Information

Version

2.0

Created at

2022-09-12 03:08:57 UTC

Updated at

2022-09-12 03:08:57 UTC

NP-MRD ID

NP0323610

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate

Description

Methyl 2-[(1R,4S,4aS,5'R,8aS)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,5,6,7,8,8a-hexahydro-4H-spiro[naphthalene-1,2'-oxolane]-5'-yl]acetate belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate is found in Grindelia stricta. Based on a literature review very few articles have been published on methyl 2-[(1R,4S,4aS,5'R,8aS)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,5,6,7,8,8a-hexahydro-4H-spiro[naphthalene-1,2'-oxolane]-5'-yl]acetate.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309122205082D          

 25 27  0  0  1  0            999 V2000
    4.0502    3.7344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1522    2.9157    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4942    2.4180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7342    2.7390    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5963    1.5993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9383    1.1016    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5121    1.8080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5020    0.4993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1034   -0.2230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2932   -0.0670    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1912    0.7516    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4803   -0.8706    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2697   -1.1103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8779   -1.4343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0886   -1.1945    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4862   -1.7583    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9015   -0.3910    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1121   -0.1512    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0131   -0.9703    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7117   -0.1959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0749    0.6523    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5274    1.2160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3168    0.9762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5039    0.1727    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9025    0.8950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
  6 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  6  0  0  0
 17 15  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 17 24  1  0  0  0  0
 10 24  1  0  0  0  0
 24 25  1  1  0  0  0
M  END


  Mrv1652309122205082D          

 25 27  0  0  1  0            999 V2000
    4.0502    3.7344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1522    2.9157    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4942    2.4180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7342    2.7390    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5963    1.5993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9383    1.1016    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5121    1.8080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5020    0.4993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1034   -0.2230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2932   -0.0670    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1912    0.7516    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4803   -0.8706    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2697   -1.1103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8779   -1.4343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0886   -1.1945    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4862   -1.7583    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9015   -0.3910    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1121   -0.1512    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0131   -0.9703    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7117   -0.1959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0749    0.6523    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5274    1.2160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3168    0.9762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5039    0.1727    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9025    0.8950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
  6 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  6  0  0  0
 17 15  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 17 24  1  0  0  0  0
 10 24  1  0  0  0  0
 24 25  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0323610

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C[C@@]1(C)CC[C@@]2(O1)C(C)=C[C@H](O)[C@H]1C(C)(C)CCC[C@]21C

> <INCHI_IDENTIFIER>
InChI=1S/C21H34O4/c1-14-12-15(22)17-18(2,3)8-7-9-20(17,5)21(14)11-10-19(4,25-21)13-16(23)24-6/h12,15,17,22H,7-11,13H2,1-6H3/t15-,17-,19+,20-,21+/m0/s1

> <INCHI_KEY>
ZEXMQNFNHJUMOQ-RJQCYMMPSA-N

> <FORMULA>
C21H34O4

> <MOLECULAR_WEIGHT>
350.499

> <EXACT_MASS>
350.245709575

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
59

> <JCHEM_AVERAGE_POLARIZABILITY>
40.06583135349942

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl 2-[(1R,4S,4aS,5'R,8aS)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,5,6,7,8,8a-hexahydro-4H-spiro[naphthalene-1,2'-oxolane]-5'-yl]acetate

> <JCHEM_LOGP>
3.381580140333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.520362790273715

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0085933155342772

> <JCHEM_POLAR_SURFACE_AREA>
55.760000000000005

> <JCHEM_REFRACTIVITY>
97.8437

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1R,4S,4aS,5'R,8aS)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4H-spiro[naphthalene-1,2'-oxolane]-5'-ylacetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       7.560   6.971   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       7.751   5.443   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       6.523   4.514   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       5.104   5.113   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.713   2.985   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.485   2.056   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.689   3.375   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.537   0.932   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.793  -0.416   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.281  -0.125   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       4.090   1.403   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.630  -1.625   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.103  -2.073   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.505  -2.677   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.032  -2.230   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       0.908  -3.282   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       1.683  -0.730   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.209  -0.282   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.024  -1.811   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.328  -0.366   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.140   1.218   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.985   2.270   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.458   1.822   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.807   0.322   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.551   1.671   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7    8   11                                             
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12   24                                             
CONECT   11   10    6                                                       
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   24                                                  
CONECT   18   17   19   20   21                                             
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   18   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   17   10   25                                             
CONECT   25   24                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   54    0
END

View in JSmol

Synonyms

Value	Source
Methyl 2-[(1R,4S,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,5,6,7,8,8a-hexahydro-4H-spiro[naphthalene-1,2'-oxolane]-5'-yl]acetic acid	Generator

Chemical Formula

C₂₁H₃₄O₄

Average Mass

350.4990 Da

Monoisotopic Mass

350.24571 Da

IUPAC Name

methyl 2-[(1R,4S,4aS,5'R,8aS)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,5,6,7,8,8a-hexahydro-4H-spiro[naphthalene-1,2'-oxolane]-5'-yl]acetate

Traditional Name

methyl (1R,4S,4aS,5'R,8aS)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4H-spiro[naphthalene-1,2'-oxolane]-5'-ylacetate

CAS Registry Number

Not Available

SMILES

COC(=O)C[C@@]1(C)CC[C@@]2(O1)C(C)=C[C@H](O)[C@H]1C(C)(C)CCC[C@]21C

InChI Identifier

InChI=1S/C21H34O4/c1-14-12-15(22)17-18(2,3)8-7-9-20(17,5)21(14)11-10-19(4,25-21)13-16(23)24-6/h12,15,17,22H,7-11,13H2,1-6H3/t15-,17-,19+,20-,21+/m0/s1

InChI Key

ZEXMQNFNHJUMOQ-RJQCYMMPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Grindelia stricta	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
Grindelane diterpenoid
Abscisic acid
Fatty acid ester
Fatty acyl
Methyl ester
Tetrahydrofuran
Carboxylic acid ester
Secondary alcohol
Carboxylic acid derivative
Dialkyl ether
Oxacycle
Ether
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Alcohol
Hydrocarbon derivative
Carbonyl group
Organic oxygen compound
Organic oxide
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.38	ChemAxon
pKa (Strongest Acidic)	14.52	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	55.76 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	97.84 m³·mol⁻¹	ChemAxon
Polarizability	40.07 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162902033

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate (NP0323610)

MOL for NP0323610 (methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate)

3D MOL for NP0323610 (methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate)

3D SDF for NP0323610 (methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate)

3D-SDF for NP0323610 (methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate)

PDB for NP0323610 (methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate)

3D PDB for NP0323610 (methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate)

SMILES for NP0323610 (methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate)

INCHI for NP0323610 (methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate)

Structure for NP0323610 (methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate)

3D Structure for NP0323610 (methyl 2-[(1r,4s,4as,5'r,8as)-4-hydroxy-2,5,5,5',8a-pentamethyl-4a,6,7,8-tetrahydro-4h-spiro[naphthalene-1,2'-oxolan]-5'-yl]acetate)