NP-MRD: Showing NP-Card for (1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid (NP0323506)

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Record Information

Version

2.0

Created at

2022-09-12 02:58:33 UTC

Updated at

2022-09-12 02:58:33 UTC

NP-MRD ID

NP0323506

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid

Description

(1R,2R,5S,8S,9S,10R,11R)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]Heptadec-13-ene-9-carboxylic acid belongs to the class of organic compounds known as c19-gibberellin 6-carboxylic acids. (1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid is found in Prunus cerasus. These are c19-gibberellins with a carboxyl group at the 6-position (1R,2R,5S,8S,9S,10R,11R)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]Heptadec-13-ene-9-carboxylic acid is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652307272023582D          

 26 30  0  0  1  0            999 V2000
    0.1402   -0.5591    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0861    0.9376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3767    1.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1399    1.8842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1453    0.7794    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8608    1.4823    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4440    0.0553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9958    0.6683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6203    0.1046    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7879    0.4371    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3958   -1.3435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2032   -1.5143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1553   -1.9571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6433    1.3426    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8031   -0.0720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3659   -1.5436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1984    0.0230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6433   -1.1253    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1144   -0.0036    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3594    0.9318    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0739    0.5193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0739   -0.3058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3594   -0.7181    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6449   -0.3058    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6449    0.5193    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5354    1.9571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  4  6  1  0  0  0  0
  5  9  1  0  0  0  0
  6  8  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9  2  1  6  0  0  0
  6  2  1  6  0  0  0
  8 10  2  0  0  0  0
  1  9  1  0  0  0  0
  1 11  1  1  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 14 15  1  0  0  0  0
 15 17  2  0  0  0  0
  5 19  1  1  0  0  0
 20 21  2  0  0  0  0
 20 25  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 14  1  6  0  0  0
 25  5  1  0  0  0  0
 24 18  1  1  0  0  0
 24  1  1  0  0  0  0
 23 16  1  0  0  0  0
 23 15  1  6  0  0  0
  6 26  1  0  0  0  0
M  END

     RDKit          3D

 46 50  0  0  0  0  0  0  0  0999 V2000
    3.7216   -1.4933   -1.0392 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8533   -0.5175   -0.8648 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4779   -0.4886   -1.4323 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7882    0.4186   -0.4224 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7838    1.5510   -0.3460 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0522    0.7454   -0.0778 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1945    1.4168   -0.4270 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0047    0.4060    1.4165 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5729    0.3729    1.9084 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7267   -0.3486    0.8826 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7138   -0.3706    1.2108 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2138   -1.5466    1.9151 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4761   -1.9373    1.6471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4314   -1.0940    0.8859 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7705    0.1043    0.2422 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6039    0.6336   -0.8659 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4827    1.0805    1.3123 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2847    1.9519    1.7216 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1899    0.8544    1.7652 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3890   -0.3214   -0.1600 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5864    0.8219   -0.7914 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8559    0.9028   -2.2313 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1949    2.0335   -2.7032 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7630   -0.1637   -3.0872 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4395   -2.3485   -1.6346 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7212   -1.4359   -0.5831 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4624    0.0061   -2.4311 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9748   -1.4612   -1.4162 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8739    1.9836   -1.3633 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5712    2.2867    0.4277 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6976    0.8335   -1.0729 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5898    1.1559    2.0014 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4334   -0.5981    1.5860 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1803    1.3479    2.1948 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5338   -0.2726    2.8351 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1151   -1.3734    0.8005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5909   -2.0789    2.6228 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8215   -2.8928    1.9899 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8561   -1.7431    0.0674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2303   -0.7222    1.5564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4379    1.7053   -1.0736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4624   -0.0065   -1.7548 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6794    0.5182   -0.5708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3221   -1.2492   -0.7104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8621    1.7511   -0.2666 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5498   -0.4181   -3.6641 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0
  9  8  1  0
  8  6  1  0
  6  7  1  6
  6  5  1  0
  5  4  1  0
  4  3  1  6
  3  2  1  0
  2  1  2  3
  4 21  1  0
 21 22  1  0
 22 24  1  0
 22 23  2  0
 21 20  1  0
 20 15  1  0
 15 16  1  6
 15 14  1  0
 14 13  1  0
 13 12  2  0
 12 11  1  0
 11 19  1  1
 19 17  1  0
 17 18  2  0
  4 10  1  0
 11 20  1  0
 11 10  1  0
  2  6  1  0
 17 15  1  0
 10 36  1  6
  9 34  1  0
  9 35  1  0
  8 32  1  0
  8 33  1  0
  7 31  1  0
  5 29  1  0
  5 30  1  0
  3 27  1  0
  3 28  1  0
  1 25  1  0
  1 26  1  0
 21 45  1  1
 24 46  1  0
 20 44  1  6
 16 41  1  0
 16 42  1  0
 16 43  1  0
 14 39  1  0
 14 40  1  0
 13 38  1  0
 12 37  1  0
M  END


  Mrv1652307272023582D          

 26 30  0  0  1  0            999 V2000
    0.1402   -0.5591    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0861    0.9376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3767    1.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1399    1.8842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1453    0.7794    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8608    1.4823    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4440    0.0553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9958    0.6683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6203    0.1046    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7879    0.4371    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3958   -1.3435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2032   -1.5143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1553   -1.9571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6433    1.3426    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8031   -0.0720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3659   -1.5436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1984    0.0230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6433   -1.1253    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1144   -0.0036    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3594    0.9318    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0739    0.5193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0739   -0.3058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3594   -0.7181    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6449   -0.3058    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6449    0.5193    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5354    1.9571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  4  6  1  0  0  0  0
  5  9  1  0  0  0  0
  6  8  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9  2  1  6  0  0  0
  6  2  1  6  0  0  0
  8 10  2  0  0  0  0
  1  9  1  0  0  0  0
  1 11  1  1  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 14 15  1  0  0  0  0
 15 17  2  0  0  0  0
  5 19  1  1  0  0  0
 20 21  2  0  0  0  0
 20 25  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 14  1  6  0  0  0
 25  5  1  0  0  0  0
 24 18  1  1  0  0  0
 24  1  1  0  0  0  0
 23 16  1  0  0  0  0
 23 15  1  6  0  0  0
  6 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0323506

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@]1([H])[C@@]3(C)CC=C[C@@]21OC3=O

> <INCHI_IDENTIFIER>
InChI=1S/C19H22O5/c1-10-8-17-9-18(10,23)7-4-11(17)19-6-3-5-16(2,15(22)24-19)13(19)12(17)14(20)21/h3,6,11-13,23H,1,4-5,7-9H2,2H3,(H,20,21)/t11-,12-,13-,16-,17+,18+,19-/m1/s1

> <INCHI_KEY>
UXLXLQYIDWLPKX-KQBHUUJHSA-N

> <FORMULA>
C19H22O5

> <MOLECULAR_WEIGHT>
330.38

> <EXACT_MASS>
330.146723808

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
33.929560808629866

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2R,5S,8S,9S,10R,11R)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadec-13-ene-9-carboxylic acid

> <ALOGPS_LOGP>
1.54

> <JCHEM_LOGP>
1.4258168906666677

> <ALOGPS_LOGS>
-2.67

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
19.32983384181271

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.255546599591768

> <JCHEM_PKA_STRONGEST_BASIC>
-0.9049336541766887

> <JCHEM_POLAR_SURFACE_AREA>
83.83

> <JCHEM_REFRACTIVITY>
85.05400000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.09e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,5S,8S,9S,10R,11R)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadec-13-ene-9-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-JUL-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-JUL-20         0                                  
HETATM    1  C   UNK     0       0.262  -1.044   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.027   1.750   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.703   2.933   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.128   3.517   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.271   1.455   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.473   2.767   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.695   0.103   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.725   1.247   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.158   0.195   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.204   0.816   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.739  -2.508   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.246  -2.827   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      -0.290  -3.653   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      -1.201   2.506   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -3.366  -0.134   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.550  -2.881   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -2.237   0.043   0.000  0.00  0.00           O+0
HETATM   18  H   UNK     0      -1.201  -2.101   0.000  0.00  0.00           H+0
HETATM   19  H   UNK     0      -0.214  -0.007   0.000  0.00  0.00           H+0
HETATM   20  C   UNK     0      -2.538   1.739   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -3.871   0.969   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -3.871  -0.571   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.538  -1.340   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.204  -0.571   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.204   0.969   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       4.733   3.653   0.000  0.00  0.00           O+0
CONECT    1    9   11   24                                                  
CONECT    2    9    6                                                       
CONECT    3    4    5                                                       
CONECT    4    3    6                                                       
CONECT    5    3    9   19   25                                             
CONECT    6    4    8    2   26                                             
CONECT    7    8    9                                                       
CONECT    8    6    7   10                                                  
CONECT    9    5    7    2    1                                             
CONECT   10    8                                                            
CONECT   11    1   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14   15   25                                                       
CONECT   15   14   17   23                                                  
CONECT   16   23                                                            
CONECT   17   15                                                            
CONECT   18   24                                                            
CONECT   19    5                                                            
CONECT   20   21   25                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   16   15                                             
CONECT   24   23   25   18    1                                             
CONECT   25   20   24   14    5                                             
CONECT   26    6                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   60    0
END

View in JSmol

Synonyms

Value	Source
(1R,2R,5S,8S,9S,10R,11R)-5-Hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1,.0,.0,]heptadec-13-ene-9-carboxylate	Generator
GA95	HMDB
Gibberellin A95	HMDB
Gibberellin GA95	HMDB

Chemical Formula

C₁₉H₂₂O₅

Average Mass

330.3800 Da

Monoisotopic Mass

330.14672 Da

IUPAC Name

(1R,2R,5S,8S,9S,10R,11R)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadec-13-ene-9-carboxylic acid

Traditional Name

(1R,2R,5S,8S,9S,10R,11R)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadec-13-ene-9-carboxylic acid

CAS Registry Number

Not Available

SMILES

[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@]1([H])[C@@]3(C)CC=C[C@@]21OC3=O

InChI Identifier

InChI=1S/C19H22O5/c1-10-8-17-9-18(10,23)7-4-11(17)19-6-3-5-16(2,15(22)24-19)13(19)12(17)14(20)21/h3,6,11-13,23H,1,4-5,7-9H2,2H3,(H,20,21)/t11-,12-,13-,16-,17+,18+,19-/m1/s1

InChI Key

UXLXLQYIDWLPKX-KQBHUUJHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Prunus cerasus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as c19-gibberellin 6-carboxylic acids. These are c19-gibberellins with a carboxyl group at the 6-position.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

C19-gibberellin 6-carboxylic acids

Alternative Parents

Substituents

20-norgibberellane-6-carboxylic acid
Diterpene lactone
Dicarboxylic acid or derivatives
Gamma butyrolactone
Cyclic alcohol
Tertiary alcohol
Tetrahydrofuran
Carboxylic acid ester
Lactone
Oxacycle
Carboxylic acid
Carboxylic acid derivative
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Alcohol
Carbonyl group
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.54	ALOGPS
logP	1.43	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	4.26	ChemAxon
pKa (Strongest Basic)	-0.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	85.05 m³·mol⁻¹	ChemAxon
Polarizability	33.93 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0041350

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB021273

KNApSAcK ID

C00000295

Chemspider ID

62922568

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101995857

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid (NP0323506)

MOL for NP0323506 ((1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid)

3D MOL for NP0323506 ((1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid)

3D SDF for NP0323506 ((1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid)

3D-SDF for NP0323506 ((1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid)

PDB for NP0323506 ((1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid)

3D PDB for NP0323506 ((1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid)

SMILES for NP0323506 ((1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid)

INCHI for NP0323506 ((1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid)

Structure for NP0323506 ((1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid)

3D Structure for NP0323506 ((1r,2r,5s,8s,9s,10r,11r)-5-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1⁵,⁸.0¹,¹⁰.0²,⁸]heptadec-13-ene-9-carboxylic acid)