NP-MRD: Showing NP-Card for (3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one (NP0323259)

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Record Information

Version

2.0

Created at

2022-09-12 02:33:53 UTC

Updated at

2022-09-12 02:33:54 UTC

NP-MRD ID

NP0323259

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one

Description

Curcumalactone belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom. (3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one is found in Curcuma wenyujin. (3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one was first documented in 2012 (PMID: 22853802). Based on a literature review a small amount of articles have been published on Curcumalactone (PMID: 25679443) (PMID: 24456521).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 41 42  0  0  0  0  0  0  0  0999 V2000
   -1.8477   -2.2546    1.4593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7417   -1.3885    0.4609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7744   -1.9620   -0.9005 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6465    0.0445    0.7450 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8447    0.7905    0.1350 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3789    2.2095    0.1983 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8755    2.1470   -0.0836 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6823    2.4148   -1.5371 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4391    0.7807    0.3545 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5702    0.1396   -0.5123 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2624   -0.7920    0.4501 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7370   -0.9168    0.2171 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0570   -1.4455   -1.1661 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4938    0.3557    0.5097 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0123   -0.1902    1.7872 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3350   -0.7178    2.8649 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3734    1.0219    1.5420 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8607   -1.8687    2.4673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9230   -3.3242    1.3502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9418   -1.2413   -1.7139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5760   -2.7506   -0.9446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8388   -2.5120   -1.1129 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7978    0.2485    1.8596 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0787    0.4383   -0.8694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7251    0.5944    0.7731 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5876    2.6722    1.1855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8931    2.7953   -0.5918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4187    2.9727    0.4948 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3586    2.6620   -1.8060 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2927    3.3069   -1.8034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0909    1.5748   -2.1490 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2224   -0.4449   -1.3676 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2813    0.8835   -0.9495 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8331   -1.8056    0.4494 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1111   -1.6805    0.9333 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1548   -0.6042   -1.8814 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0382   -1.9933   -1.1707 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2720   -2.1719   -1.4548 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1028    0.2803    1.4374 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8221    1.2257    0.6579 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2181    0.5059   -0.3179 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 12  1  0
 12 14  1  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9 17  1  1
 17 15  1  0
 15 16  2  0
  9  7  1  0
  7  8  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  2  1  0
  2  3  1  0
  2  1  2  3
 15 11  1  0
  4  9  1  0
 13 36  1  0
 13 37  1  0
 13 38  1  0
 12 35  1  0
 14 39  1  0
 14 40  1  0
 14 41  1  0
 11 34  1  1
 10 32  1  0
 10 33  1  0
  7 28  1  1
  8 29  1  0
  8 30  1  0
  8 31  1  0
  6 26  1  0
  6 27  1  0
  5 24  1  0
  5 25  1  0
  4 23  1  1
  3 20  1  0
  3 21  1  0
  3 22  1  0
  1 18  1  0
  1 19  1  0
M  END


  Mrv1652309122204332D          

 17 18  0  0  1  0            999 V2000
    0.4875   -1.6527    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0396   -1.0396    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8465   -1.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7846   -0.2549    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7846    1.0799    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0396    1.8646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2695    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7545    1.0799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5391    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2065    1.3099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1203    2.1304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9602    0.9744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5391   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2065   -0.4849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7545   -0.2549    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  4  2  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  4  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 11 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
  9 17  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0323259

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@@H]1C[C@@]2(OC1=O)[C@@H](C)CC[C@H]2C(C)=C

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O2/c1-9(2)12-8-15(17-14(12)16)11(5)6-7-13(15)10(3)4/h9,11-13H,3,6-8H2,1-2,4-5H3/t11-,12-,13-,15+/m0/s1

> <INCHI_KEY>
JBUPYYZICGGNGI-PWNZVWSESA-N

> <FORMULA>
C15H24O2

> <MOLECULAR_WEIGHT>
236.355

> <EXACT_MASS>
236.177630013

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
27.606684724167128

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S,5R,6S,9S)-6-methyl-9-(prop-1-en-2-yl)-3-(propan-2-yl)-1-oxaspiro[4.4]nonan-2-one

> <JCHEM_LOGP>
3.816483528666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-7.095199581288182

> <JCHEM_POLAR_SURFACE_AREA>
26.3

> <JCHEM_REFRACTIVITY>
68.2053

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3S,5R,6S,9S)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       0.910  -3.085   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.941  -1.941   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.447  -2.261   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.465  -0.476   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.000   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.465   2.016   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.941   3.481   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.370   0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.275   2.016   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.740   1.540   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.986   2.445   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.825   3.977   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.392   1.819   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.740  -0.000   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       5.986  -0.905   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       3.275  -0.476   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    9                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7    4   10   17                                             
CONECT   10    9   11                                                       
CONECT   11   10   12   15                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   11   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15    9                                                       
MASTER        0    0    0    0    0    0    0    0   17    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₄O₂

Average Mass

236.3550 Da

Monoisotopic Mass

236.17763 Da

IUPAC Name

(3S,5R,6S,9S)-6-methyl-9-(prop-1-en-2-yl)-3-(propan-2-yl)-1-oxaspiro[4.4]nonan-2-one

Traditional Name

(3S,5R,6S,9S)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one

CAS Registry Number

Not Available

SMILES

CC(C)[C@@H]1C[C@@]2(OC1=O)[C@@H](C)CC[C@H]2C(C)=C

InChI Identifier

InChI=1S/C15H24O2/c1-9(2)12-8-15(17-14(12)16)11(5)6-7-13(15)10(3)4/h9,11-13H,3,6-8H2,1-2,4-5H3/t11-,12-,13-,15+/m0/s1

InChI Key

JBUPYYZICGGNGI-PWNZVWSESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Curcuma wenyujin	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactones

Sub Class

Gamma butyrolactones

Direct Parent

Gamma butyrolactones

Alternative Parents

Substituents

Gamma butyrolactone
Oxolane
Carboxylic acid ester
Oxacycle
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.82	ChemAxon
pKa (Strongest Basic)	-7.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.3 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	68.21 m³·mol⁻¹	ChemAxon
Polarizability	27.61 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00011524

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15071433

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Qin B, Li Y, Meng L, Ouyang J, Jin D, Wu L, Zhang X, Jia X, You S: "Mirror-image" manipulation of curdione stereoisomer scaffolds by chemical and biological approaches: development of a sesquiterpenoid library. J Nat Prod. 2015 Feb 27;78(2):272-8. doi: 10.1021/np500864e. Epub 2015 Feb 13. [PubMed:25679443 ]
Chen Y, Zhang L, Qin B, Zhang X, Jia X, Wang X, Jin D, You S: An insight into the curdione biotransformation pathway by Aspergillus niger. Nat Prod Res. 2014;28(7):454-60. doi: 10.1080/14786419.2013.873434. Epub 2014 Jan 23. [PubMed:24456521 ]
Leverett CA, Purohit VC, Johnson AG, Davis RL, Tantillo DJ, Romo D: Dyotropic rearrangements of fused tricyclic beta-lactones: application to the synthesis of (-)-curcumanolide A and (-)-curcumalactone. J Am Chem Soc. 2012 Aug 15;134(32):13348-56. doi: 10.1021/ja303414a. Epub 2012 Aug 1. [PubMed:22853802 ]
LOTUS database [Link]

Showing NP-Card for (3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one (NP0323259)

MOL for NP0323259 ((3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one)

3D MOL for NP0323259 ((3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one)

3D SDF for NP0323259 ((3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one)

3D-SDF for NP0323259 ((3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one)

PDB for NP0323259 ((3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one)

3D PDB for NP0323259 ((3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one)

SMILES for NP0323259 ((3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one)

INCHI for NP0323259 ((3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one)

Structure for NP0323259 ((3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one)

3D Structure for NP0323259 ((3s,5r,6s,9s)-3-isopropyl-6-methyl-9-(prop-1-en-2-yl)-1-oxaspiro[4.4]nonan-2-one)