NP-MRD: Showing NP-Card for (6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one (NP0323047)

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Record Information

Version

2.0

Created at

2022-09-12 02:12:48 UTC

Updated at

2022-09-12 02:12:48 UTC

NP-MRD ID

NP0323047

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one

Description

Chalciporone belongs to the class of organic compounds known as azepines. These are organic compounds containing an unsaturated seven-member heterocycle with one nitrogen atom replacing a carbon atom. (6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one is found in Chalciporus piperatus. (6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one was first documented in 2001 (PMID: 11457295). Based on a literature review very few articles have been published on Chalciporone.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 39  0  0  0  0  0  0  0  0999 V2000
   -6.1557    1.3552   -0.3245 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5575    0.3926   -1.3282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5769   -0.5257   -0.6701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0380   -1.3443   -1.3901 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2722   -0.4532    0.7664 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2374   -1.4394    1.1976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9710   -1.1800    0.4815 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8527   -0.8817    1.1243 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3907   -0.6292    0.3808 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4823   -0.3370    1.0253 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7566   -0.0707    0.3909 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7738    0.2032    1.1680 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.1454    0.5116    0.9460 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3277    1.9906    0.5860 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8153   -0.2920   -0.1009 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3311   -0.6732   -1.2681 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9958   -0.3675   -1.7729 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8806   -0.1062   -1.0606 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8317    0.7634    0.3461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3579    1.7851    0.3155 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7346    2.1297   -0.8614 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3345   -0.2412   -1.7825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0287    0.9689   -2.1058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8711    0.5714    1.0036 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1795   -0.6092    1.4022 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5654   -2.4811    0.9640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1089   -1.4082    2.2914 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8869   -1.2200   -0.5934 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8191   -0.8159    2.1925 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4155   -0.6857   -0.6996 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4967   -0.2729    2.1309 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6988    0.3910    1.9188 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5046    2.3322   -0.0660 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3005    2.1422    0.0653 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3850    2.6110    1.5192 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8487   -0.6061    0.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9699   -1.2629   -1.9139 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8863   -0.3511   -2.8547 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9746    0.1063   -1.5905 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 11  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  0
  2 23  1  0
  5 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  0
  8 29  1  0
  9 30  1  0
 10 31  1  0
 13 32  1  1
 14 33  1  0
 14 34  1  0
 14 35  1  0
 15 36  1  0
 16 37  1  0
 17 38  1  0
 18 39  1  0
M  END


  Mrv1652309122204122D          

 18 18  0  0  0  0            999 V2000
    0.2961   -5.4151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0105   -5.8276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7250   -5.4151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7250   -4.5901    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4395   -5.8276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1539   -5.4151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8684   -5.8276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5829   -5.4151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2974   -5.8276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0118   -5.4151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7263   -5.8276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4079   -5.3628    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.1963   -5.6060    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7574   -5.0012    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4977   -6.3740    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0852   -7.0884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2694   -7.2114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6646   -6.6503    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 11 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0323047

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(=O)CC\C=C\C=C\C1=NC(C)C=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C16H21NO/c1-3-16(18)13-7-5-4-6-11-15-12-9-8-10-14(2)17-15/h4-6,8-12,14H,3,7,13H2,1-2H3/b5-4+,11-6+

> <INCHI_KEY>
YHYHJUHRELVMJW-LJIKRCSCSA-N

> <FORMULA>
C16H21NO

> <MOLECULAR_WEIGHT>
243.35

> <EXACT_MASS>
243.1623143

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
29.570739276153297

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(6E,8E)-9-(2-methyl-2H-azepin-7-yl)nona-6,8-dien-3-one

> <JCHEM_LOGP>
3.936342608666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
7.93847498512785

> <JCHEM_POLAR_SURFACE_AREA>
29.43

> <JCHEM_REFRACTIVITY>
81.4058

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(6E,8E)-9-(7-methyl-7H-azepin-2-yl)nona-6,8-dien-3-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       0.553 -10.108   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.886 -10.878   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.220 -10.108   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.220  -8.568   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       4.554 -10.878   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.887 -10.108   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.221 -10.878   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.555 -10.108   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.888 -10.878   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.222 -10.108   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.556 -10.878   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0      13.828 -10.011   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0      15.300 -10.465   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      16.347  -9.336   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      15.862 -11.898   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      15.092 -13.232   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.570 -13.461   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      12.441 -12.414   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   18                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   11                                                       
MASTER        0    0    0    0    0    0    0    0   18    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₂₁NO

Average Mass

243.3500 Da

Monoisotopic Mass

243.16231 Da

IUPAC Name

(6E,8E)-9-(2-methyl-2H-azepin-7-yl)nona-6,8-dien-3-one

Traditional Name

(6E,8E)-9-(7-methyl-7H-azepin-2-yl)nona-6,8-dien-3-one

CAS Registry Number

Not Available

SMILES

CCC(=O)CC\C=C\C=C\C1=NC(C)C=CC=C1

InChI Identifier

InChI=1S/C16H21NO/c1-3-16(18)13-7-5-4-6-11-15-12-9-8-10-14(2)17-15/h4-6,8-12,14H,3,7,13H2,1-2H3/b5-4+,11-6+

InChI Key

YHYHJUHRELVMJW-LJIKRCSCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Chalciporus piperatus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as azepines. These are organic compounds containing an unsaturated seven-member heterocycle with one nitrogen atom replacing a carbon atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Azepines

Sub Class

Not Available

Direct Parent

Azepines

Alternative Parents

Substituents

Azepine
Ketone
Ketimine
Azacycle
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Organic nitrogen compound
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Imine
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.94	ChemAxon
pKa (Strongest Basic)	7.94	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	29.43 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	81.41 m³·mol⁻¹	ChemAxon
Polarizability	29.57 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00055305

Chemspider ID

10312222

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21725394

PDB ID

Not Available

ChEBI ID

187737

Good Scents ID

Not Available

References

General References

Spiteller P, Hamprecht D, Steglich W: Biosynthesis of the 2H-azepine alkaloid chalciporone. J Am Chem Soc. 2001 May 23;123(20):4837-8. doi: 10.1021/ja015545n. [PubMed:11457295 ]
LOTUS database [Link]

Showing NP-Card for (6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one (NP0323047)

MOL for NP0323047 ((6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one)

3D MOL for NP0323047 ((6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one)

3D SDF for NP0323047 ((6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one)

3D-SDF for NP0323047 ((6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one)

PDB for NP0323047 ((6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one)

3D PDB for NP0323047 ((6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one)

SMILES for NP0323047 ((6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one)

INCHI for NP0323047 ((6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one)

Structure for NP0323047 ((6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one)

3D Structure for NP0323047 ((6e,8e)-9-(7-methyl-7h-azepin-2-yl)nona-6,8-dien-3-one)