NP-MRD: Showing NP-Card for bombykol (NP0322790)

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Record Information

Version

2.0

Created at

2022-09-12 01:46:37 UTC

Updated at

2022-09-12 01:46:37 UTC

NP-MRD ID

NP0322790

Secondary Accession Numbers

None

Natural Product Identification

Common Name

bombykol

Description

Bombykol, also known as isobombycol, belongs to the class of organic compounds known as long-chain fatty alcohols. These are fatty alcohols that have an aliphatic tail of 13 to 21 carbon atoms. Thus, bombykol is considered to be a fatty alcohol lipid molecule. bombykol is found in Bombyx mori and Hemileuca electra. Bombykol is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 47 46  0  0  0  0  0  0  0  0999 V2000
    7.4534   -0.3818    1.7052 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5494    0.0821    0.5960 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4865    0.9746    1.2122 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7426    0.1958    2.1974 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4709   -0.0258    2.1316 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6429    0.4845    1.0555 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3282    0.2472    1.0019 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5435    0.7948   -0.1191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1341   -0.3094   -0.9264 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9314    0.2707   -2.0680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0025    1.1929   -1.6430 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0129    0.5117   -0.7049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6261   -0.6171   -1.4373 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6483   -1.4602   -0.8119 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9962   -1.0298   -0.5017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3110    0.1171    0.3690 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9387    1.3082   -0.1752 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7790    0.5269    2.2585 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9807   -1.1343    2.3624 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3663   -0.8646    1.2805 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1422    0.7096   -0.0925 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0387   -0.7536    0.0739 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8801    1.4689    0.4558 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0273    1.7893    1.7626 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2617   -0.2435    3.0602 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9286   -0.6200    2.8924 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0172    1.0761    0.2397 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8537   -0.3394    1.7741 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1825    1.3547   -0.8260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2276    1.5257    0.2530 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6964   -0.8943   -1.3830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7008   -1.0039   -0.2962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2200   -0.5127   -2.7564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1639    0.8863   -2.6470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6138    2.1126   -1.1881 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5993    1.5010   -2.5253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3921    0.0726    0.1484 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5953    1.2819   -0.2541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9751   -0.2098   -2.4480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7292   -1.2698   -1.7707 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1864   -1.9958    0.1197 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7764   -2.3831   -1.5234 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5818   -0.8761   -1.5072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6293   -1.9191   -0.1037 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4340    0.1441    0.5425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8248   -0.0434    1.3792 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1208    1.2720   -1.1625 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  3  1  0
  3  2  1  0
  2  1  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
  4 25  1  0
  3 23  1  0
  3 24  1  0
  2 21  1  0
  2 22  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  5 26  1  0
  6 27  1  0
  7 28  1  0
  8 29  1  0
  8 30  1  0
  9 31  1  0
  9 32  1  0
 10 33  1  0
 10 34  1  0
 11 35  1  0
 11 36  1  0
 12 37  1  0
 12 38  1  0
 13 39  1  0
 13 40  1  0
 14 41  1  0
 14 42  1  0
 15 43  1  0
 15 44  1  0
 16 45  1  0
 16 46  1  0
 17 47  1  0
M  END


  Mrv0541 05041401032D          

 21 20  0  0  0  0            999 V2000
    4.9500    6.9829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    6.5704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    5.7454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    5.3329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    4.5079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066    5.7454    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066    4.0954    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    4.5079    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.8579    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  2  0  0  0  0
  6  5  1  0  0  0  0
  7  6  2  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  1  0  0  0  0
 15 14  1  0  0  0  0
 16 15  1  0  0  0  0
 17 16  1  0  0  0  0
 18  4  1  0  0  0  0
 19  5  1  0  0  0  0
 20  6  1  0  0  0  0
 21  7  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0322790

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]\C(CCC)=C(/[H])\C(\[H])=C(/[H])CCCCCCCCCO

> <INCHI_IDENTIFIER>
InChI=1S/C16H30O/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17/h4-7,17H,2-3,8-16H2,1H3/b5-4-,7-6+

> <INCHI_KEY>
CIVIWCVVOFNUST-SCFJQAPRSA-N

> <FORMULA>
C16H30O

> <MOLECULAR_WEIGHT>
238.4088

> <EXACT_MASS>
238.229665582

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
32.544067482426485

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(10E,12Z)-hexadeca-10,12-dien-1-ol

> <ALOGPS_LOGP>
6.38

> <JCHEM_LOGP>
5.416302612666667

> <ALOGPS_LOGS>
-6.05

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.84394282199214

> <JCHEM_PKA_STRONGEST_BASIC>
-1.9922594096606376

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
79.58009999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.10e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
bombykol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-MAY-14   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-MAY-14         0                                  
HETATM    1  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   18  H   UNK     0       0.000   0.000   0.000  0.00  0.00           H+0
HETATM   19  H   UNK     0       0.000   0.000   0.000  0.00  0.00           H+0
HETATM   20  H   UNK     0       0.000   0.000   0.000  0.00  0.00           H+0
HETATM   21  H   UNK     0       0.000   0.000   0.000  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   18                                                  
CONECT    5    4    6   19                                                  
CONECT    6    5    7   20                                                  
CONECT    7    6    8   21                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18    4                                                            
CONECT   19    5                                                            
CONECT   20    6                                                            
CONECT   21    7                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   40    0
END

View in JSmol

Synonyms

Value	Source
(Z,e)-10,12-Hexadecadien-1-ol	ChEBI
10E,12Z-Hexadecadien-1-ol	ChEBI
Hexadeca-10E,12Z-dien-1-ol	ChEBI
Isobombycol	ChEBI
10,12-Hexadecadien-1-ol	MeSH
Bombykol, (e,Z)-isomer	MeSH

Chemical Formula

C₁₆H₃₀O

Average Mass

238.4088 Da

Monoisotopic Mass

238.22967 Da

IUPAC Name

(10E,12Z)-hexadeca-10,12-dien-1-ol

Traditional Name

bombykol

CAS Registry Number

Not Available

SMILES

[H]\C(CCC)=C(/[H])\C(\[H])=C(/[H])CCCCCCCCCO

InChI Identifier

InChI=1S/C16H30O/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17/h4-7,17H,2-3,8-16H2,1H3/b5-4-,7-6+

InChI Key

CIVIWCVVOFNUST-SCFJQAPRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Bombyx mori	LOTUS Database	35616633
Hemileuca electra	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty alcohols. These are fatty alcohols that have an aliphatic tail of 13 to 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Long-chain fatty alcohols

Alternative Parents

Substituents

Long chain fatty alcohol
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

long-chain primary fatty alcohol (CHEBI:41200 )
Fatty alcohols (LMFA05000007 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.38	ALOGPS
logP	5.42	ChemAxon
logS	-6	ALOGPS
pKa (Strongest Acidic)	16.84	ChemAxon
pKa (Strongest Basic)	-2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	79.58 m³·mol⁻¹	ChemAxon
Polarizability	32.54 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

DB02982

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

C16873

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Bombykol

METLIN ID

Not Available

PubChem Compound

445128

PDB ID

Not Available

ChEBI ID

41200

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for bombykol (NP0322790)

MOL for NP0322790 (bombykol)

3D MOL for NP0322790 (bombykol)

3D SDF for NP0322790 (bombykol)

3D-SDF for NP0322790 (bombykol)

PDB for NP0322790 (bombykol)

3D PDB for NP0322790 (bombykol)

SMILES for NP0322790 (bombykol)

INCHI for NP0322790 (bombykol)

Structure for NP0322790 (bombykol)

3D Structure for NP0322790 (bombykol)