NP-MRD: Showing NP-Card for 5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene (NP0322695)

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Record Information

Version

2.0

Created at

2022-09-12 01:37:10 UTC

Updated at

2022-09-12 01:37:10 UTC

NP-MRD ID

NP0322695

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene

Description

Hopene b belongs to the class of organic compounds known as hopanoids. These are terpenoids containing hopane skeleton(A'-Neogammacerane), a pentacyclic structure with four cyclohexane rings and one cyclopentane ring (and often, a side chain emerging from C30). 5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene is found in Abietinella abietina, Adiantum capillus-veneris, Adiantum edgeworthii, Cheiropleuria bicuspis, Davallia mariesii, Goniophlebium mengtzeense, Nitrosomonas europaea, Plicanthus hirtellus, Polypodium vulgare and Pyrrosia lingua. Hopene b is possibly neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv0541 04121516382D          

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M  END

     RDKit          3D

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  Mrv0541 04121516382D          

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 17 29  1  0  0  0  0
 29 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0322695

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=C)C1CCC2(C)C1CCC1(C)C2CCC2C3(C)CCCC(C)(C)C3CCC12C

> <INCHI_IDENTIFIER>
InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3

> <INCHI_KEY>
HHXYJYBYNZMZKX-UHFFFAOYSA-N

> <FORMULA>
C30H50

> <MOLECULAR_WEIGHT>
410.73

> <EXACT_MASS>
410.39125161

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
80

> <JCHEM_AVERAGE_POLARIZABILITY>
53.09839702153452

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1,2,9,14,18,18-hexamethyl-6-(prop-1-en-2-yl)pentacyclo[11.8.0.0²,¹⁰.0⁵,⁹.0¹⁴,¹⁹]henicosane

> <ALOGPS_LOGP>
6.91

> <JCHEM_LOGP>
8.678857548

> <ALOGPS_LOGS>
-6.93

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
129.3928

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.78e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1,2,9,14,18,18-hexamethyl-6-(prop-1-en-2-yl)pentacyclo[11.8.0.0²,¹⁰.0⁵,⁹.0¹⁴,¹⁹]henicosane

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 12-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-APR-15         0                                  
HETATM    1  C   UNK     0      13.941   2.146   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.484   2.645   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      12.187   4.156   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.324   1.632   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      11.462   0.098   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.046  -0.507   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.033   0.653   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.385  -0.744   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.823   1.975   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.073   3.320   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.534   3.343   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.743   2.022   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.994   3.367   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.493   0.676   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.703  -0.645   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.163  -0.622   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.413   0.723   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.874   0.747   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.623  -0.599   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.083  -0.575   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.543  -0.552   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -0.206   0.793   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.584   2.115   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.855   2.664   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.875   3.628   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.124   2.092   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.914   3.414   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.454   3.390   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       5.204   2.045   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.066   3.579   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    9                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9   14                                             
CONECT    8    7                                                            
CONECT    9    7    4   10                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   29                                             
CONECT   13   12                                                            
CONECT   14   12    7   15                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   29                                                  
CONECT   18   17   19   20   26                                             
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25   26                                             
CONECT   24   23                                                            
CONECT   25   23                                                            
CONECT   26   23   18   27                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   12   17   30                                             
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   68    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₅₀

Average Mass

410.7300 Da

Monoisotopic Mass

410.39125 Da

IUPAC Name

1,2,9,14,18,18-hexamethyl-6-(prop-1-en-2-yl)pentacyclo[11.8.0.0²,¹⁰.0⁵,⁹.0¹⁴,¹⁹]henicosane

Traditional Name

1,2,9,14,18,18-hexamethyl-6-(prop-1-en-2-yl)pentacyclo[11.8.0.0²,¹⁰.0⁵,⁹.0¹⁴,¹⁹]henicosane

CAS Registry Number

Not Available

SMILES

CC(=C)C1CCC2(C)C1CCC1(C)C2CCC2C3(C)CCCC(C)(C)C3CCC12C

InChI Identifier

InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3

InChI Key

HHXYJYBYNZMZKX-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Abietinella abietina	LOTUS Database	35616633
Adiantum capillus-veneris	LOTUS Database	35616633
Adiantum edgeworthii	LOTUS Database	35616633
Cheiropleuria bicuspis	LOTUS Database	35616633
Davallia mariesii	LOTUS Database	35616633
Goniophlebium mengtzeense	LOTUS Database	35616633
Nitrosomonas europaea	LOTUS Database	35616633
Plicanthus hirtellus	LOTUS Database	35616633
Polypodium vulgare	LOTUS Database	35616633
Pyrrosia lingua	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hopanoids. These are terpenoids containing hopane skeleton(A'-Neogammacerane), a pentacyclic structure with four cyclohexane rings and one cyclopentane ring (and often, a side chain emerging from C30).

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Hopanoids

Direct Parent

Hopanoids

Alternative Parents

Substituents

Triterpenoid
Hopane-skeleton
Steroid
Branched unsaturated hydrocarbon
Polycyclic hydrocarbon
Cyclic olefin
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

a small molecule (HOP-2229-ENE )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.91	ALOGPS
logP	8.68	ChemAxon
logS	-6.9	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	129.39 m³·mol⁻¹	ChemAxon
Polarizability	53.1 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

605866

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene (NP0322695)

MOL for NP0322695 (5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene)

3D MOL for NP0322695 (5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene)

3D SDF for NP0322695 (5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene)

3D-SDF for NP0322695 (5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene)

PDB for NP0322695 (5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene)

3D PDB for NP0322695 (5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene)

SMILES for NP0322695 (5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene)

INCHI for NP0322695 (5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene)

Structure for NP0322695 (5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene)

3D Structure for NP0322695 (5a,5b,8,8,11a,13b-hexamethyl-3-(prop-1-en-2-yl)-hexadecahydrocyclopenta[a]chrysene)