NP-MRD: Showing NP-Card for 3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole (NP0322663)

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Record Information

Version

2.0

Created at

2022-09-12 01:33:58 UTC

Updated at

2022-09-12 01:33:58 UTC

NP-MRD ID

NP0322663

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole

Description

3-Geranylgeranylindole belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. 3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole is found in Aspergillus oryzae and Penicillium janthinellum. 3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole was first documented in 2004 (PMID: 15281747). Based on a literature review very few articles have been published on 3-Geranylgeranylindole (PMID: 29283570).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122203332D          

 29 30  0  0  0  0            999 V2000
   -9.4362    0.7694    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6292    0.9410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3743    1.7256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0772    0.3279    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2702    0.4994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7182   -0.1137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9112    0.0578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6563    0.8425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3592   -0.5553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5522   -0.3837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0002   -0.9968    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1932   -0.8253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9383   -0.0407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6412   -1.4384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8342   -1.2669    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2822   -1.8800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4752   -1.7084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2203   -0.9238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0768   -2.3215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -2.1500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
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  2  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
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  7  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
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M  END

     RDKit          3D

 68 69  0  0  0  0  0  0  0  0999 V2000
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    8.3688   -1.4779    1.3138 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9472   -0.3363    1.6666 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.4485    0.6995    0.9645 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7493    2.0446    0.9990 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0534    2.8732    0.1394 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0957    2.3566   -0.7157 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8141    1.0258   -0.7338 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4934    0.1557    0.1177 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.9055   -1.9611    1.2346 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3895   -0.7730   -2.3035 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1 30  1  0
  1 31  1  0
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  3 33  1  0
  3 34  1  0
  3 35  1  0
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  8 41  1  0
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 25 65  1  0
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 28 68  1  0
M  END


  Mrv1652309122203332D          

 29 30  0  0  0  0            999 V2000
   -9.4362    0.7694    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6292    0.9410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3743    1.7256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0772    0.3279    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2702    0.4994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7182   -0.1137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9233   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.3523   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  2  3  1  0  0  0  0
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M  END
> <DATABASE_ID>
NP0322663

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC1=CNC2=CC=CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C28H39N/c1-22(2)11-8-12-23(3)13-9-14-24(4)15-10-16-25(5)19-20-26-21-29-28-18-7-6-17-27(26)28/h6-7,11,13,15,17-19,21,29H,8-10,12,14,16,20H2,1-5H3/b23-13+,24-15+,25-19+

> <INCHI_KEY>
NABXYEMKOPGTET-XKFYHEJLSA-N

> <FORMULA>
C28H39N

> <MOLECULAR_WEIGHT>
389.627

> <EXACT_MASS>
389.30825026

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
50.01202371380825

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[(2E,6E,10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1H-indole

> <JCHEM_LOGP>
8.779717633333332

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.11912007212928

> <JCHEM_POLAR_SURFACE_AREA>
15.79

> <JCHEM_REFRACTIVITY>
132.7951

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
3-[(2E,6E,10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1H-indole

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0     -17.614   1.436   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -16.108   1.756   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -15.632   3.221   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -15.077   0.612   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -13.571   0.932   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -12.541  -0.212   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -11.034   0.108   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -10.558   1.573   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -10.004  -1.036   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -8.498  -0.716   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -7.467  -1.861   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.961  -1.541   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -5.485  -0.076   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -4.930  -2.685   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.424  -2.365   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.393  -3.509   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.887  -3.189   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.411  -1.724   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.143  -4.334   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.650  -4.013   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.126  -2.549   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.220  -1.303   0.000  0.00  0.00           C+0
HETATM   23  N   UNK     0       2.126  -0.057   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0       3.590  -0.533   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.258  -0.533   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   29                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   29                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   21   24                                                  
MASTER        0    0    0    0    0    0    0    0   29    0   60    0
END

View in JSmol

Synonyms

Value	Source
3-(Geranylgeranyl)indole	Kegg

Chemical Formula

C₂₈H₃₉N

Average Mass

389.6270 Da

Monoisotopic Mass

389.30825 Da

IUPAC Name

3-[(2E,6E,10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1H-indole

Traditional Name

3-[(2E,6E,10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1H-indole

CAS Registry Number

Not Available

SMILES

CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC1=CNC2=CC=CC=C12

InChI Identifier

InChI=1S/C28H39N/c1-22(2)11-8-12-23(3)13-9-14-24(4)15-10-16-25(5)19-20-26-21-29-28-18-7-6-17-27(26)28/h6-7,11,13,15,17-19,21,29H,8-10,12,14,16,20H2,1-5H3/b23-13+,24-15+,25-19+

InChI Key

NABXYEMKOPGTET-XKFYHEJLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aspergillus oryzae	LOTUS Database	35616633
Penicillium janthinellum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
3-alkylindole
Indole or derivatives
Indole
Benzenoid
Substituted pyrrole
Heteroaromatic compound
Pyrrole
Azacycle
Organoheterocyclic compound
Organic nitrogen compound
Hydrocarbon derivative
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	8.78	ChemAxon
pKa (Strongest Acidic)	16.12	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	15.79 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	132.8 m³·mol⁻¹	ChemAxon
Polarizability	50.01 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4524063

KEGG Compound ID

C20525

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5374226

PDB ID

Not Available

ChEBI ID

144391

Good Scents ID

Not Available

References

General References

Van de Bittner KC, Nicholson MJ, Bustamante LY, Kessans SA, Ram A, van Dolleweerd CJ, Scott B, Parker EJ: Heterologous Biosynthesis of Nodulisporic Acid F. J Am Chem Soc. 2018 Jan 17;140(2):582-585. doi: 10.1021/jacs.7b10909. Epub 2018 Jan 8. [PubMed:29283570 ]
Fueki S, Tokiwano T, Toshima H, Oikawa H: Biosynthesis of indole diterpenes, emindole, and paxilline: involvement of a common intermediate. Org Lett. 2004 Aug 5;6(16):2697-700. doi: 10.1021/ol049115o. [PubMed:15281747 ]
LOTUS database [Link]

Showing NP-Card for 3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole (NP0322663)

MOL for NP0322663 (3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole)

3D MOL for NP0322663 (3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole)

3D SDF for NP0322663 (3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole)

3D-SDF for NP0322663 (3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole)

PDB for NP0322663 (3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole)

3D PDB for NP0322663 (3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole)

SMILES for NP0322663 (3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole)

INCHI for NP0322663 (3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole)

Structure for NP0322663 (3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole)

3D Structure for NP0322663 (3-[(2e,6e,10e)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1h-indole)