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Record Information
Version2.0
Created at2022-09-12 00:47:18 UTC
Updated at2022-09-12 00:47:18 UTC
NP-MRD IDNP0322166
Secondary Accession NumbersNone
Natural Product Identification
Common Name5,22-dihydroxy-11-(methylsulfanyl)-19,20-dithia-3,13-diazahexacyclo[13.5.1.1¹⁴,¹⁸.0¹,¹³.0³,¹¹.0⁴,⁹]docosane-2,8,12,16-tetrone
Description5,22-Dihydroxy-11-(methylsulfanyl)-19,20-dithia-3,13-diazahexacyclo[13.5.1.1¹⁴,¹⁸.0¹,¹³.0³,¹¹.0⁴,⁹]Docosane-2,8,12,16-tetrone belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof. 5,22-dihydroxy-11-(methylsulfanyl)-19,20-dithia-3,13-diazahexacyclo[13.5.1.1¹⁴,¹⁸.0¹,¹³.0³,¹¹.0⁴,⁹]docosane-2,8,12,16-tetrone is found in Epicoccum nigrum. 5,22-Dihydroxy-11-(methylsulfanyl)-19,20-dithia-3,13-diazahexacyclo[13.5.1.1¹⁴,¹⁸.0¹,¹³.0³,¹¹.0⁴,⁹]Docosane-2,8,12,16-tetrone is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Thumb
Synonyms
ValueSource
5,22-Dihydroxy-11-(methylsulphanyl)-19,20-dithia-3,13-diazahexacyclo[13.5.1.1,.0,.0,.0,]docosane-2,8,12,16-tetroneGenerator
5,22-Dihydroxy-11-(methylsulphanyl)-19,20-dithia-3,13-diazahexacyclo[13.5.1.1¹⁴,¹⁸.0¹,¹³.0³,¹¹.0⁴,⁹]docosane-2,8,12,16-tetroneGenerator
Chemical FormulaC19H22N2O6S3
Average Mass470.5700 Da
Monoisotopic Mass470.06400 Da
IUPAC Name5,22-dihydroxy-11-(methylsulfanyl)-19,20-dithia-3,13-diazahexacyclo[13.5.1.1¹⁴,¹⁸.0¹,¹³.0³,¹¹.0⁴,⁹]docosane-2,8,12,16-tetrone
Traditional Name5,22-dihydroxy-11-(methylsulfanyl)-19,20-dithia-3,13-diazahexacyclo[13.5.1.1¹⁴,¹⁸.0¹,¹³.0³,¹¹.0⁴,⁹]docosane-2,8,12,16-tetrone
CAS Registry NumberNot Available
SMILES
CSC12CC3C(C(O)CCC3=O)N1C(=O)C13CC4C(C(O)C(CC4=O)SS1)N3C2=O
InChI Identifier
InChI=1S/C19H22N2O6S3/c1-28-18-5-7-9(22)2-3-10(23)13(7)20(18)17(27)19-6-8-11(24)4-12(29-30-19)15(25)14(8)21(19)16(18)26/h7-8,10,12-15,23,25H,2-6H2,1H3
InChI KeyIZVLOMZFKBEMKA-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Epicoccum nigrumLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentAlpha amino acids and derivatives
Alternative Parents
Substituents
  • Alpha-amino acid or derivatives
  • Indole or derivatives
  • Thiodioxopiperazine
  • Dioxopiperazine
  • 2,5-dioxopiperazine
  • N-alkylpiperazine
  • 1,4-diazinane
  • Piperazine
  • Cyclic alcohol
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Carboxamide group
  • Secondary alcohol
  • Lactam
  • Organic disulfide
  • Ketone
  • Azacycle
  • Sulfenyl compound
  • Hemithioaminal
  • Thioether
  • Dialkylthioether
  • Organoheterocyclic compound
  • Organic oxide
  • Organonitrogen compound
  • Organooxygen compound
  • Organic oxygen compound
  • Alcohol
  • Organosulfur compound
  • Organopnictogen compound
  • Carbonyl group
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.41ALOGPS
logP0.33ChemAxon
logS-1.8ALOGPS
pKa (Strongest Acidic)13.71ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area115.22 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity112.13 m³·mol⁻¹ChemAxon
Polarizability44.55 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound56664171
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]