NP-MRD: Showing NP-Card for 9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene (NP0321832)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-12 00:15:11 UTC

Updated at

2022-09-12 00:15:11 UTC

NP-MRD ID

NP0321832

Secondary Accession Numbers

None

Natural Product Identification

Common Name

9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene

Description

9-Bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]Undec-9-ene belongs to the class of organic compounds known as acetals. Acetals are compounds having the structure R2C(OR')2 ( R' not Hydrogen) and thus diethers of geminal diols. Originally, the term was confined to derivatives of aldehydes (one R = H), but it now applies equally to derivatives of ketones (neither R = H ). Mixed acetals have different R' groups. 9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene is found in Laurencia nipponica. 9-Bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]Undec-9-ene is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 40  0  0  0  0  0  0  0  0999 V2000
   -0.1178    0.9650    2.3220 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4783    0.8937    1.0689 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1082    2.0556    0.3899 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3445    1.5161   -0.3083 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6929    0.2635   -0.1013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5768   -0.1586   -0.0749 Br  0  0  0  0  0  0  0  0  0  0  0  0
   -1.7700   -0.8651    0.1124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8824   -1.8262   -1.0196 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1614   -1.5985    1.3916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3084   -0.3478    0.2637 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2241   -0.1667   -1.0897 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5862    0.3002   -1.3368 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6777   -0.2889   -0.5703 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5056    0.5007    0.0683 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8699   -1.7517   -0.5293 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6346    1.7081   -1.3960 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0710    2.3506   -0.3370 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2766    2.5926   -0.5980 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2518    1.8803    2.8872 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3246    0.1253    2.8451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4451    2.8553    1.0414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9218    2.1714   -0.9655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8686   -1.3788   -2.0198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1141   -2.6496   -0.9529 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8660   -2.3402   -0.9163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1176   -1.1669    1.7973 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3474   -1.5753    2.1374 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3794   -2.6705    1.2003 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1872   -1.1328    0.8543 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1197   -1.1704   -1.6180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4748    0.5377   -1.6397 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8205    0.0208   -2.4240 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4780    1.5831    0.1177 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3428    0.0305    0.6332 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7103   -2.2092   -1.5459 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2426   -2.2549    0.2367 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9230   -2.0436   -0.2645 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5403    3.3693   -0.2814 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2457    1.8759    0.6217 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 13  1  0
 13 14  2  3
 13 12  1  0
 12 11  1  0
 11 10  1  0
 10  2  1  0
  2  1  2  3
  2  3  1  0
  3 18  1  0
 18 17  1  0
 17 16  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  7  9  1  0
 16 12  1  0
  7 10  1  0
 15 35  1  0
 15 36  1  0
 15 37  1  0
 14 33  1  0
 14 34  1  0
 12 32  1  6
 11 30  1  0
 11 31  1  0
 10 29  1  1
  1 19  1  0
  1 20  1  0
  3 21  1  1
 17 38  1  0
 17 39  1  0
  4 22  1  0
  8 23  1  0
  8 24  1  0
  8 25  1  0
  9 26  1  0
  9 27  1  0
  9 28  1  0
M  END


  Mrv1533005011512432D          

 18 19  0  0  0  0            999 V2000
    5.5826    1.3311    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7791    1.5179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5390    2.3072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2155    0.9154    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4100    1.2044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5918    0.8997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6585    0.1442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4835    0.1442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5918   -0.6113    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4100   -0.9160    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2155   -0.6270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5519    0.1442    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7263   -0.5722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2775    0.1442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4525    0.1442    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    1.7263    0.8605    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0289    1.3012    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6860    1.6845    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  4 12  1  0  0  0  0
  9 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
  6 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0321832

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=C)C1CC2C(=C)C(OCO1)C=C(Br)C2(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C15H21BrO2/c1-9(2)12-6-11-10(3)13(18-8-17-12)7-14(16)15(11,4)5/h7,11-13H,1,3,6,8H2,2,4-5H3

> <INCHI_KEY>
BQERDPIYHVBRCF-UHFFFAOYSA-N

> <FORMULA>
C15H21BrO2

> <MOLECULAR_WEIGHT>
313.235

> <EXACT_MASS>
312.072493

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
29.64679175376925

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene

> <ALOGPS_LOGP>
4.31

> <JCHEM_LOGP>
3.7126135920000003

> <ALOGPS_LOGS>
-4.07

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.062455291241135

> <JCHEM_POLAR_SURFACE_AREA>
18.46

> <JCHEM_REFRACTIVITY>
77.5042

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.64e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 01-MAY-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   01-MAY-15         0                                  
HETATM    1  C   UNK     0      10.421   2.485   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.921   2.833   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.473   4.307   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.869   1.709   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.365   2.248   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.838   1.679   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.963   0.269   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.503   0.269   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.838  -1.141   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       6.365  -1.710   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       7.869  -1.170   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       8.497   0.269   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       3.223  -1.068   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.385   0.269   0.000  0.00  0.00           C+0
HETATM   15 Br   UNK     0       0.845   0.269   0.000  0.00  0.00          Br+0
HETATM   16  C   UNK     0       3.223   1.606   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.921   2.429   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.147   3.144   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   12                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   16                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   13                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11    4                                                       
CONECT   13    9   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14    6   17   18                                             
CONECT   17   16                                                            
CONECT   18   16                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₁BrO₂

Average Mass

313.2350 Da

Monoisotopic Mass

312.07249 Da

IUPAC Name

9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene

Traditional Name

9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene

CAS Registry Number

Not Available

SMILES

CC(=C)C1CC2C(=C)C(OCO1)C=C(Br)C2(C)C

InChI Identifier

InChI=1S/C15H21BrO2/c1-9(2)12-6-11-10(3)13(18-8-17-12)7-14(16)15(11,4)5/h7,11-13H,1,3,6,8H2,2,4-5H3

InChI Key

BQERDPIYHVBRCF-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Laurencia nipponica	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acetals. Acetals are compounds having the structure R2C(OR')2 ( R' not Hydrogen) and thus diethers of geminal diols. Originally, the term was confined to derivatives of aldehydes (one R = H), but it now applies equally to derivatives of ketones (neither R = H ). Mixed acetals have different R' groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Ethers

Direct Parent

Acetals

Alternative Parents

Substituents

Oxacycle
Bromoalkene
Haloalkene
Organoheterocyclic compound
Vinyl halide
Vinyl bromide
Acetal
Hydrocarbon derivative
Organobromide
Organohalogen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.31	ALOGPS
logP	3.71	ChemAxon
logS	-4.1	ALOGPS
pKa (Strongest Basic)	-4.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	18.46 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	77.5 m³·mol⁻¹	ChemAxon
Polarizability	29.65 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene (NP0321832)

MOL for NP0321832 (9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene)

3D MOL for NP0321832 (9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene)

3D SDF for NP0321832 (9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene)

3D-SDF for NP0321832 (9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene)

PDB for NP0321832 (9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene)

3D PDB for NP0321832 (9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene)

SMILES for NP0321832 (9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene)

INCHI for NP0321832 (9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene)

Structure for NP0321832 (9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene)

3D Structure for NP0321832 (9-bromo-8,8-dimethyl-11-methylidene-5-(prop-1-en-2-yl)-2,4-dioxabicyclo[5.3.1]undec-9-ene)