NP-MRD: Showing NP-Card for gorlic acids (NP0321780)

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Record Information

Version

2.0

Created at

2022-09-12 00:10:07 UTC

Updated at

2022-09-12 00:10:07 UTC

NP-MRD ID

NP0321780

Secondary Accession Numbers

None

Natural Product Identification

Common Name

gorlic acids

Description

13-Cyclopent-2-en-1-yltridec-6-enoic acid, also known as gorlic acids or 13-(2-cyclopentenyl)-6-tridecenoate, belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. gorlic acids is found in Caloncoba echinata and Carpotroche brasiliensis. 13-Cyclopent-2-en-1-yltridec-6-enoic acid is a weakly acidic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 50 50  0  0  0  0  0  0  0  0999 V2000
    8.1395   -0.5014    2.5401 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5570   -0.7479    1.4657 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2786   -1.2285    0.3982 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0508   -0.5253    1.3097 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8106    0.9279    1.0630 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4484    1.4414    0.9445 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5037    1.0281   -0.1045 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0722   -0.3668   -0.1245 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8037   -0.7795    0.0465 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6461    0.0825    0.2809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3539   -0.1310   -0.8496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5692    0.7469   -0.6493 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5208    0.4915   -1.8176 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9762   -0.9129   -1.8977 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7029   -1.5127   -0.7599 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0152   -0.9181   -0.4553 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.6431   -1.6024    0.7400 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4772   -0.7639    1.3079 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5130    0.5313    0.5978 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1136    0.5131   -0.0817 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1063   -0.8040   -0.5149 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7354   -1.1924    0.4864 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5833   -0.8505    2.2554 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3175    1.5232    1.9092 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3614    1.2342    0.1052 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9220    1.3442    1.9754 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4937    2.5901    0.8616 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9822    1.1812   -1.1490 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6169    1.7147   -0.1757 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7954   -1.1689   -0.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6596   -1.8812    0.0003 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8803    1.1401    0.3600 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1301   -0.2167    1.2494 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5846   -1.2160   -0.8516 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1316    0.1342   -1.7939 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0924    0.4993    0.2720 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2163    1.7913   -0.6912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7965    0.6124   -2.7237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2320    1.2864   -1.9902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6004   -1.0597   -2.8561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0621   -1.5428   -2.1594 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8857   -2.5949   -1.0314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0073   -1.5034    0.1293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7018   -1.0581   -1.3399 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4620   -2.6069    1.0963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0993   -0.9399    2.1993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2263    0.4661   -0.2464 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6270    1.4048    1.2364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1611    1.2280   -0.9375 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3867    0.7716    0.6930 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0
  2  1  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 20  1  0
 20 19  1  0
 19 18  1  0
 18 17  2  0
 17 16  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  5 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  9 31  1  0
 10 32  1  0
 10 33  1  0
 11 34  1  0
 11 35  1  0
 12 36  1  0
 12 37  1  0
 13 38  1  0
 13 39  1  0
 14 40  1  0
 14 41  1  0
 15 42  1  0
 15 43  1  0
 16 44  1  6
 20 49  1  0
 20 50  1  0
 19 47  1  0
 19 48  1  0
 18 46  1  0
 17 45  1  0
M  END


  Mrv0541 04121518252D          

 20 20  0  0  0  0            999 V2000
   -0.4090    1.5856    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4090    0.7606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1234    0.3481    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3055    0.3481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3055   -0.4769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0200   -0.8894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0200   -1.7144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7344   -2.1269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7344   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4489   -3.3644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1634   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8779   -3.3644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5923   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3068   -3.3644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0213   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7357   -3.3644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4894   -3.0288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0414   -3.6419    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6289   -4.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8220   -4.1848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  4  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 16 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0321780

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC(=O)CCCCC=CCCCCCCC1CCC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C18H30O2/c19-18(20)16-10-8-6-4-2-1-3-5-7-9-13-17-14-11-12-15-17/h2,4,11,14,17H,1,3,5-10,12-13,15-16H2,(H,19,20)

> <INCHI_KEY>
XADKGDBMULSEAC-UHFFFAOYSA-N

> <FORMULA>
C18H30O2

> <MOLECULAR_WEIGHT>
278.436

> <EXACT_MASS>
278.224580206

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
35.470240918741055

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
13-(cyclopent-2-en-1-yl)tridec-6-enoic acid

> <ALOGPS_LOGP>
6.73

> <JCHEM_LOGP>
5.8006013229999995

> <ALOGPS_LOGS>
-6.12

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.885821319747302

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
86.6642

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.12e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
gorlic acids

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-APR-15         0                                  
HETATM    1  O   UNK     0      -0.763   2.960   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -0.763   1.420   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -2.097   0.650   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       0.570   0.650   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.570  -0.890   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.904  -1.660   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.904  -3.200   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.238  -3.970   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.238  -5.510   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.571  -6.280   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.905  -5.510   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.239  -6.280   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.572  -5.510   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.906  -6.280   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.240  -5.510   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.573  -6.280   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.980  -5.654   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      15.011  -6.798   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      14.241  -8.132   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      12.734  -7.812   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   20                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   16                                                       
MASTER        0    0    0    0    0    0    0    0   20    0   40    0
END

View in JSmol

Synonyms

Value	Source
13-(2-Cyclopenten-1-yl)tridecenoic acid	ChEBI
13-(2-Cyclopentenyl)-6-tridecenoic acid	ChEBI
13-Cyclopent-2-en-1-yltridec-6-enoic acids	ChEBI
13-Cyclopent-2-enyl-tridec-6-ensaeuren	ChEBI
2-Cyclopentene-1-tridecenoic acid	ChEBI
Gorlic acids	ChEBI
13-(2-Cyclopenten-1-yl)tridecenoate	Generator
13-(2-Cyclopentenyl)-6-tridecenoate	Generator
2-Cyclopentene-1-tridecenoate	Generator
13-Cyclopent-2-en-1-yltridec-6-enoate	Generator
GORLate	Generator

Chemical Formula

C₁₈H₃₀O₂

Average Mass

278.4360 Da

Monoisotopic Mass

278.22458 Da

IUPAC Name

13-(cyclopent-2-en-1-yl)tridec-6-enoic acid

Traditional Name

gorlic acids

CAS Registry Number

Not Available

SMILES

OC(=O)CCCCC=CCCCCCCC1CCC=C1

InChI Identifier

InChI=1S/C18H30O2/c19-18(20)16-10-8-6-4-2-1-3-5-7-9-13-17-14-11-12-15-17/h2,4,11,14,17H,1,3,5-10,12-13,15-16H2,(H,19,20)

InChI Key

XADKGDBMULSEAC-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Caloncoba echinata	LOTUS Database	35616633
Carpotroche brasiliensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Unsaturated fatty acid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

long-chain fatty acid (CHEBI:61673 )
polyunsaturated fatty acid (CHEBI:61673 )
cyclopentenyl fatty acid (CHEBI:61673 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.73	ALOGPS
logP	5.8	ChemAxon
logS	-6.1	ALOGPS
pKa (Strongest Acidic)	4.89	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	86.66 m³·mol⁻¹	ChemAxon
Polarizability	35.47 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

329668

PDB ID

Not Available

ChEBI ID

61673

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for gorlic acids (NP0321780)

MOL for NP0321780 (gorlic acids)

3D MOL for NP0321780 (gorlic acids)

3D SDF for NP0321780 (gorlic acids)

3D-SDF for NP0321780 (gorlic acids)

PDB for NP0321780 (gorlic acids)

3D PDB for NP0321780 (gorlic acids)

SMILES for NP0321780 (gorlic acids)

INCHI for NP0321780 (gorlic acids)

Structure for NP0321780 (gorlic acids)

3D Structure for NP0321780 (gorlic acids)