Np mrd loader

Record Information
Version2.0
Created at2022-09-11 23:58:07 UTC
Updated at2022-09-11 23:58:07 UTC
NP-MRD IDNP0321650
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2s)-5-carbamimidamido-2-[(1-hydroxy-8-{[(1r,2s,4r,6r,7r,10s,11r,14s,16s)-16-hydroxy-7,11-dimethyl-6-(6-oxopyran-3-yl)-3-oxapentacyclo[8.8.0.0²,⁴.0²,⁷.0¹¹,¹⁶]octadecan-14-yl]oxy}-8-oxooctylidene)amino]pentanoic acid
DescriptionMarinobufotoxin belongs to the class of organic compounds known as bufanolides and derivatives. These are steroid lactones containing a pyran-2-one moiety linked to the C17 atom of a cyclopenta[a]phenanthrene derivative. (2s)-5-carbamimidamido-2-[(1-hydroxy-8-{[(1r,2s,4r,6r,7r,10s,11r,14s,16s)-16-hydroxy-7,11-dimethyl-6-(6-oxopyran-3-yl)-3-oxapentacyclo[8.8.0.0²,⁴.0²,⁷.0¹¹,¹⁶]octadecan-14-yl]oxy}-8-oxooctylidene)amino]pentanoic acid is found in Rhinella marina. It was first documented in 2009 (PMID: 19721255). Based on a literature review a significant number of articles have been published on Marinobufotoxin (PMID: 34131171) (PMID: 33610630) (PMID: 27616454) (PMID: 21401694).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC38H56N4O9
Average Mass712.8850 Da
Monoisotopic Mass712.40473 Da
IUPAC Name(2S)-5-carbamimidamido-2-[(1-hydroxy-8-{[(1R,2S,4R,6S,7R,10S,11R,14S,16S)-16-hydroxy-7,11-dimethyl-6-(2-oxo-2H-pyran-5-yl)-3-oxapentacyclo[8.8.0.0^{2,4}.0^{2,7}.0^{11,16}]octadecan-14-yl]oxy}-8-oxooctylidene)amino]pentanoic acid
Traditional Name(2S)-5-carbamimidamido-2-[(1-hydroxy-8-{[(1R,2S,4R,6S,7R,10S,11R,14S,16S)-16-hydroxy-7,11-dimethyl-6-(6-oxopyran-3-yl)-3-oxapentacyclo[8.8.0.0^{2,4}.0^{2,7}.0^{11,16}]octadecan-14-yl]oxy}-8-oxooctylidene)amino]pentanoic acid
CAS Registry NumberNot Available
SMILES
C[C@]12CC[C@H]3[C@@H](CC[C@]4(O)C[C@H](CC[C@]34C)OC(=O)CCCCCCC(O)=N[C@@H](CCCNC(N)=N)C(O)=O)[C@]11O[C@@H]1C[C@@H]2C1=COC(=O)C=C1
InChI Identifier
InChI=1S/C38H56N4O9/c1-35-16-13-24(50-32(45)10-6-4-3-5-9-30(43)42-28(33(46)47)8-7-19-41-34(39)40)21-37(35,48)18-15-26-25(35)14-17-36(2)27(20-29-38(26,36)51-29)23-11-12-31(44)49-22-23/h11-12,22,24-29,48H,3-10,13-21H2,1-2H3,(H,42,43)(H,46,47)(H4,39,40,41)/t24-,25-,26+,27+,28-,29+,35+,36+,37-,38+/m0/s1
InChI KeySRSJNASBFYXJMJ-OQARAGJZSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Rhinella marinaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as bufanolides and derivatives. These are steroid lactones containing a pyran-2-one moiety linked to the C17 atom of a cyclopenta[a]phenanthrene derivative.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassSteroid lactones
Direct ParentBufanolides and derivatives
Alternative Parents
Substituents
  • Bufanolide-skeleton
  • Steroid ester
  • Naphthopyran
  • N-acyl-alpha-amino acid
  • N-acyl-alpha amino acid or derivatives
  • N-acyl-l-alpha-amino acid
  • Alpha-amino acid or derivatives
  • Naphthalene
  • Fatty acid ester
  • Pyranone
  • Dicarboxylic acid or derivatives
  • Fatty amide
  • N-acyl-amine
  • Oxane
  • Fatty acyl
  • Pyran
  • Tertiary alcohol
  • Cyclic alcohol
  • Heteroaromatic compound
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Carboxylic acid ester
  • Guanidine
  • Lactone
  • Oxacycle
  • Propargyl-type 1,3-dipolar organic compound
  • Carboxylic acid derivative
  • Carboximidamide
  • Carboxylic acid
  • Dialkyl ether
  • Oxirane
  • Ether
  • Organic 1,3-dipolar compound
  • Organoheterocyclic compound
  • Organonitrogen compound
  • Alcohol
  • Organooxygen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.83ChemAxon
pKa (Strongest Acidic)3.76ChemAxon
pKa (Strongest Basic)12.15ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area217.15 ŲChemAxon
Rotatable Bond Count16ChemAxon
Refractivity197.52 m³·mol⁻¹ChemAxon
Polarizability78.96 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID103883002
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound101996079
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Crossland MR, Salim AA, Capon RJ, Shine R: Chemical cues that attract cannibalistic cane toad (Rhinella marina) larvae to vulnerable embryos. Sci Rep. 2021 Jun 15;11(1):12527. doi: 10.1038/s41598-021-90233-3. [PubMed:34131171 ]
  2. Filho EDSM, Chaves MH, Ferreira PMP, Pessoa C, Lima DJB, Maranhao SSA, de Jesus Rodrigues D, Vieira Junior GM: Cytotoxicity potential of chemical constituents isolated and derivatised from Rhinella marina venom. Toxicon. 2021 Apr 30;194:37-43. doi: 10.1016/j.toxicon.2021.02.006. Epub 2021 Feb 19. [PubMed:33610630 ]
  3. Schmeda-Hirschmann G, Quispe C, Arana GV, Theoduloz C, Urra FA, Cardenas C: Antiproliferative activity and chemical composition of the venom from the Amazonian toad Rhinella marina (Anura: Bufonidae). Toxicon. 2016 Oct;121:119-129. doi: 10.1016/j.toxicon.2016.09.004. Epub 2016 Sep 8. [PubMed:27616454 ]
  4. Yoshika M, Komiyama Y, Takahashi H: Isolation of marinobufotoxin from the supernatant of cultured PC12 cells. Clin Exp Pharmacol Physiol. 2011 May;38(5):334-7. doi: 10.1111/j.1440-1681.2011.05512.x. [PubMed:21401694 ]
  5. Kasai H, Tsubuki M, Shimada K, Nambara T, Honda T: Analyses of biologically active steroids: antitumor active OSW-1 and cardiotonic marinobufotoxin, by matrix-assisted laser desorption/ionization quadrupole ion trap time-of-flight tandem mass spectrometry. Chem Pharm Bull (Tokyo). 2009 Sep;57(9):948-56. doi: 10.1248/cpb.57.948. [PubMed:19721255 ]
  6. LOTUS database [Link]