NP-MRD: Showing NP-Card for 3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol (NP0321333)

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Record Information

Version

2.0

Created at

2022-09-11 23:29:16 UTC

Updated at

2022-09-11 23:29:16 UTC

NP-MRD ID

NP0321333

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol

Description

3,3'-Dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol belongs to the class of organic compounds known as phenanthrols. Phenanthrols are compounds containing a phenanthrene (or its hydrogenated derivative) to which a hydroxyl group is attached. 3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol is found in Marchantia polymorpha. 3,3'-Dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004251513482D          

 36 41  0  0  0  0            999 V2000
    2.7770   -3.1599    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.8395   -2.4454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -1.7309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.2520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3145   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7270   -1.7309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.6020    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1533004251513482D          

 36 41  0  0  0  0            999 V2000
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M  END
> <DATABASE_ID>
NP0321333

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(O)C(=C2C=CC3=CC(O)=CC=C3C2=C1)C1=C2C=CC3=CC(O)=CC=C3C2=CC(OC)=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C30H22O6/c1-35-25-13-23-19-9-5-17(31)11-15(19)3-7-21(23)27(29(25)33)28-22-8-4-16-12-18(32)6-10-20(16)24(22)14-26(36-2)30(28)34/h3-14,31-34H,1-2H3

> <INCHI_KEY>
OZTDQEHAPPNBIR-UHFFFAOYSA-N

> <FORMULA>
C30H22O6

> <MOLECULAR_WEIGHT>
478.5

> <EXACT_MASS>
478.141638428

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
51.870249332352195

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1-(2,7-dihydroxy-3-methoxyphenanthren-1-yl)-3-methoxyphenanthrene-2,7-diol

> <ALOGPS_LOGP>
5.63

> <JCHEM_LOGP>
6.048774386666665

> <ALOGPS_LOGS>
-5.74

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.396294028966263

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.831780045634302

> <JCHEM_PKA_STRONGEST_BASIC>
-4.598356592163845

> <JCHEM_POLAR_SURFACE_AREA>
99.38000000000001

> <JCHEM_REFRACTIVITY>
137.84499999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.71e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-(2,7-dihydroxy-3-methoxyphenanthren-1-yl)-3-methoxyphenanthrene-2,7-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0       5.184  -5.898   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       6.724  -5.898   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       7.494  -4.565   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.034  -4.565   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.804  -3.231   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.034  -1.897   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.804  -0.564   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.344  -0.564   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.114  -1.897   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.654  -1.897   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      14.424  -3.231   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      15.964  -3.231   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      13.654  -4.565   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.114  -4.565   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.344  -3.231   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.494  -1.897   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.724  -3.231   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       5.184  -3.231   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       6.724  -0.564   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       9.034   0.770   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       6.724   2.104   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       7.494   3.437   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       6.724   4.771   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.414   0.770   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.414  -1.897   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.874  -1.897   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -1.746   0.770   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   17                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   15                                                  
CONECT    6    5    7   16                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   15                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14    5    9                                                  
CONECT   16    6   17   19                                                  
CONECT   17   16    3   18                                                  
CONECT   18   17                                                            
CONECT   19   16   20   27                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   25                                                  
CONECT   23   22   24                                                       
CONECT   24   23                                                            
CONECT   25   22   26                                                       
CONECT   26   25   27   36                                                  
CONECT   27   26   19   28                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   36                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   26   30                                                  
MASTER        0    0    0    0    0    0    0    0   36    0   82    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₂₂O₆

Average Mass

478.5000 Da

Monoisotopic Mass

478.14164 Da

IUPAC Name

1-(2,7-dihydroxy-3-methoxyphenanthren-1-yl)-3-methoxyphenanthrene-2,7-diol

Traditional Name

1-(2,7-dihydroxy-3-methoxyphenanthren-1-yl)-3-methoxyphenanthrene-2,7-diol

CAS Registry Number

Not Available

SMILES

COC1=C(O)C(=C2C=CC3=CC(O)=CC=C3C2=C1)C1=C2C=CC3=CC(O)=CC=C3C2=CC(OC)=C1O

InChI Identifier

InChI=1S/C30H22O6/c1-35-25-13-23-19-9-5-17(31)11-15(19)3-7-21(23)27(29(25)33)28-22-8-4-16-12-18(32)6-10-20(16)24(22)14-26(36-2)30(28)34/h3-14,31-34H,1-2H3

InChI Key

OZTDQEHAPPNBIR-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Marchantia polymorpha	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenanthrols. Phenanthrols are compounds containing a phenanthrene (or its hydrogenated derivative) to which a hydroxyl group is attached.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Phenanthrenes and derivatives

Sub Class

Phenanthrols

Direct Parent

Phenanthrols

Alternative Parents

Substituents

Phenanthrol
2-naphthol
Naphthalene
Anisole
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.63	ALOGPS
logP	6.05	ChemAxon
logS	-5.7	ALOGPS
pKa (Strongest Acidic)	8.83	ChemAxon
pKa (Strongest Basic)	-4.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	99.38 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	137.84 m³·mol⁻¹	ChemAxon
Polarizability	51.87 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol (NP0321333)

MOL for NP0321333 (3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol)

3D MOL for NP0321333 (3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol)

3D SDF for NP0321333 (3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol)

3D-SDF for NP0321333 (3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol)

PDB for NP0321333 (3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol)

3D PDB for NP0321333 (3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol)

SMILES for NP0321333 (3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol)

INCHI for NP0321333 (3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol)

Structure for NP0321333 (3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol)

3D Structure for NP0321333 (3,3'-dimethoxy-[1,1'-biphenanthrene]-2,2',7,7'-tetrol)