NP-MRD: Showing NP-Card for 3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid (NP0321110)

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Record Information

Version

2.0

Created at

2022-09-11 23:08:23 UTC

Updated at

2022-09-11 23:08:23 UTC

NP-MRD ID

NP0321110

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid

Description

3-[1,2,6,15-Tetramethyl-12-(prop-1-en-2-yl)-5-(propan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-6-yl]propanoic acid belongs to the class of organic compounds known as steroid acids. Steroid acids are compounds containing a carboxyl group attached to a steroid backbone. 3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid is found in Hoya parasitica, Phellodendron chinense, Platypodium elegans and Wrightia tinctoria. 3-[1,2,6,15-Tetramethyl-12-(prop-1-en-2-yl)-5-(propan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-6-yl]propanoic acid is a weakly acidic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004171521022D          

 32 35  0  0  0  0            999 V2000
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    1.2336   -0.5346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0458   -0.6798    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3261   -1.4557    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1382   -1.6009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.7231    1.0900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1513    1.1365    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  4 26  1  0  0  0  0
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M  END

     RDKit          3D

 82 85  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1533004171521022D          

 32 35  0  0  0  0            999 V2000
    0.9533    0.2414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 13 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
  7 21  1  0  0  0  0
 12 21  1  0  0  0  0
 21 22  1  0  0  0  0
 14 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
  9 26  1  0  0  0  0
  4 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0321110

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C1CCC2(C)C(CCC3C4C(CCC4(C)CCC23C)C(C)=C)C1(C)CCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C30H50O2/c1-19(2)21-11-14-27(5)17-18-29(7)23(26(21)27)9-10-24-28(6,15-13-25(31)32)22(20(3)4)12-16-30(24,29)8/h20-24,26H,1,9-18H2,2-8H3,(H,31,32)

> <INCHI_KEY>
YFEMLOPURCNWND-UHFFFAOYSA-N

> <FORMULA>
C30H50O2

> <MOLECULAR_WEIGHT>
442.728

> <EXACT_MASS>
442.38108085

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
82

> <JCHEM_AVERAGE_POLARIZABILITY>
54.96966330640792

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[1,2,6,15-tetramethyl-12-(prop-1-en-2-yl)-5-(propan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-6-yl]propanoic acid

> <ALOGPS_LOGP>
6.37

> <JCHEM_LOGP>
7.966863230666668

> <ALOGPS_LOGS>
-6.65

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.928994683403806

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
132.98630000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.95e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-[5-isopropyl-1,2,6,15-tetramethyl-12-(prop-1-en-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-6-yl]propanoic acid

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0       1.780   0.451   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.303  -0.998   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.310  -2.175   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.819  -1.269   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.342  -2.717   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.858  -2.988   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.851  -1.811   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.374  -3.259   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.327  -0.363   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.320   0.815   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.836   0.544   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.359  -0.905   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.875  -1.176   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.091  -0.231   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.366  -1.095   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.938  -2.574   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      11.399  -2.624   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      12.070  -4.010   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      10.406  -3.802   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.890  -3.531   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.367  -2.082   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.256  -3.618   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      12.041   1.308   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      10.683   2.035   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      13.349   2.121   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.811  -0.092   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.029   1.433   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       3.670   0.942   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.993   2.447   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.459   2.920   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       5.783   4.425   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0       6.601   1.886   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   26                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9   21                                             
CONECT    8    7                                                            
CONECT    9    7   10   26                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   21                                                  
CONECT   13   12   14   17                                                  
CONECT   14   13   15   23                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   13   18   19                                             
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20    7   12   22                                             
CONECT   22   21                                                            
CONECT   23   14   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23                                                            
CONECT   26    9    4   27   28                                             
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   70    0
END

View in JSmol

Synonyms

Value	Source
3-[1,2,6,15-Tetramethyl-12-(prop-1-en-2-yl)-5-(propan-2-yl)tetracyclo[8.7.0.0,.0,]heptadecan-6-yl]propanoate	Generator
3-[1,2,6,15-Tetramethyl-12-(prop-1-en-2-yl)-5-(propan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-6-yl]propanoate	Generator

Chemical Formula

C₃₀H₅₀O₂

Average Mass

442.7280 Da

Monoisotopic Mass

442.38108 Da

IUPAC Name

3-[1,2,6,15-tetramethyl-12-(prop-1-en-2-yl)-5-(propan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-6-yl]propanoic acid

Traditional Name

3-[5-isopropyl-1,2,6,15-tetramethyl-12-(prop-1-en-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-6-yl]propanoic acid

CAS Registry Number

Not Available

SMILES

CC(C)C1CCC2(C)C(CCC3C4C(CCC4(C)CCC23C)C(C)=C)C1(C)CCC(O)=O

InChI Identifier

InChI=1S/C30H50O2/c1-19(2)21-11-14-27(5)17-18-29(7)23(26(21)27)9-10-24-28(6,15-13-25(31)32)22(20(3)4)12-16-30(24,29)8/h20-24,26H,1,9-18H2,2-8H3,(H,31,32)

InChI Key

YFEMLOPURCNWND-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hoya parasitica	LOTUS Database	35616633
Phellodendron chinense	LOTUS Database	35616633
Platypodium elegans	LOTUS Database	35616633
Wrightia tinctoria	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroid acids. Steroid acids are compounds containing a carboxyl group attached to a steroid backbone.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroid acids

Direct Parent

Steroid acids

Alternative Parents

Substituents

Steroid acid
Androstane-skeleton
Carbocyclic fatty acid
Fatty acyl
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.37	ALOGPS
logP	7.97	ChemAxon
logS	-6.6	ALOGPS
pKa (Strongest Acidic)	4.93	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	132.99 m³·mol⁻¹	ChemAxon
Polarizability	54.97 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

74338889

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid (NP0321110)

MOL for NP0321110 (3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid)

3D MOL for NP0321110 (3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid)

3D SDF for NP0321110 (3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid)

3D-SDF for NP0321110 (3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid)

PDB for NP0321110 (3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid)

3D PDB for NP0321110 (3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid)

SMILES for NP0321110 (3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid)

INCHI for NP0321110 (3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid)

Structure for NP0321110 (3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid)

3D Structure for NP0321110 (3-[7-isopropyl-6,9a,9b,11a-tetramethyl-3-(prop-1-en-2-yl)-dodecahydro-1h-cyclopenta[a]phenanthren-6-yl]propanoic acid)