NP-MRD: Showing NP-Card for (3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol (NP0321002)

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Record Information

Version

2.0

Created at

2022-09-11 22:58:34 UTC

Updated at

2022-09-11 22:58:35 UTC

NP-MRD ID

NP0321002

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol

Description

121702-93-0 Belongs to the class of organic compounds known as n-alkylpyrrolidines. N-alkylpyrrolidines are compounds containing a pyrrolidine moiety that is substituted at the N1-position with an alkyl group. Pyrrolidine is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms. (3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol is found in Cassipourea guianensis. Based on a literature review very few articles have been published on 121702-93-0.

Structure

MOL 3D MOL SDF PDB SMILES InChI

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0       2.345  -0.336   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0       2.345  -1.876   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0       3.591  -2.782   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.115  -4.246   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.575  -4.246   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.099  -2.782   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.365  -2.306   0.000  0.00  0.00           C+0
HETATM    8  S   UNK     0      -1.611  -3.211   0.000  0.00  0.00           S+0
HETATM    9  S   UNK     0      -2.857  -2.306   0.000  0.00  0.00           S+0
HETATM   10  C   UNK     0      -2.381  -0.841   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.841  -0.841   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       0.064   0.405   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    2    7                                                  
CONECT    7    6    8   11                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    7   12                                                  
CONECT   12   11                                                            
MASTER        0    0    0    0    0    0    0    0   12    0   26    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₈H₁₅NOS₂

Average Mass

205.3300 Da

Monoisotopic Mass

205.05951 Da

IUPAC Name

(3R,4S)-3-[(2R)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol

Traditional Name

(3R,4S)-3-[(2R)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol

CAS Registry Number

Not Available

SMILES

CN1CCC[C@@H]1[C@H]1SSC[C@@H]1O

InChI Identifier

InChI=1S/C8H15NOS2/c1-9-4-2-3-6(9)8-7(10)5-11-12-8/h6-8,10H,2-5H2,1H3/t6-,7+,8-/m1/s1

InChI Key

BHJXMJSQJLEOMC-GJMOJQLCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cassipourea guianensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-alkylpyrrolidines. N-alkylpyrrolidines are compounds containing a pyrrolidine moiety that is substituted at the N1-position with an alkyl group. Pyrrolidine is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyrrolidines

Sub Class

N-alkylpyrrolidines

Direct Parent

N-alkylpyrrolidines

Alternative Parents

Substituents

N-alkylpyrrolidine
Dithiolane
1,2-dithiolane
Organic disulfide
Secondary alcohol
Tertiary amine
Tertiary aliphatic amine
Azacycle
Organic nitrogen compound
Amine
Organooxygen compound
Organonitrogen compound
Alcohol
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.78	ChemAxon
pKa (Strongest Acidic)	14.12	ChemAxon
pKa (Strongest Basic)	9.05	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	23.47 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	55.92 m³·mol⁻¹	ChemAxon
Polarizability	21.8 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

156706

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

180068

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol (NP0321002)

MOL for NP0321002 ((3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol)

3D MOL for NP0321002 ((3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol)

3D SDF for NP0321002 ((3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol)

3D-SDF for NP0321002 ((3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol)

PDB for NP0321002 ((3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol)

3D PDB for NP0321002 ((3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol)

SMILES for NP0321002 ((3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol)

INCHI for NP0321002 ((3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol)

Structure for NP0321002 ((3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol)

3D Structure for NP0321002 ((3r,4s)-3-[(2r)-1-methylpyrrolidin-2-yl]-1,2-dithiolan-4-ol)