NP-MRD: Showing NP-Card for 1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl (NP0320922)

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Record Information

Version

2.0

Created at

2022-09-11 22:50:33 UTC

Updated at

2022-09-11 22:50:33 UTC

NP-MRD ID

NP0320922

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl

Description

Not Available

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309122200502D          

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M  RAD  1  35   2
M  END

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M  RAD  1  10   2
M  END


  Mrv1652309122200502D          

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   -2.2751    2.7144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4681    2.5429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3819    1.7224    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6674    1.3099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0470    1.7224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7615    1.3099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4760    1.7224    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1904    1.3099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9049    1.7224    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1904    0.4849    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1356    1.3869    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6876    2.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5081    1.9137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
 22 23  1  4  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
 27 35  1  0  0  0  0
 35 36  1  0  0  0  0
 25 36  1  0  0  0  0
 36 37  1  0  0  0  0
M  RAD  1  35   2
M  END
> <DATABASE_ID>
NP0320922

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CN1[CH]N(CCCNC(N)=N)C=C1CCN=C(O)\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C30H51N6O/c1-24(2)11-7-12-25(3)13-8-14-26(4)15-9-16-27(5)21-29(37)33-19-17-28-22-36(23-35(28)6)20-10-18-34-30(31)32/h11,13,15,21-23H,7-10,12,14,16-20H2,1-6H3,(H,33,37)(H4,31,32,34)/b25-13+,26-15+,27-21+

> <INCHI_KEY>
BLQNKTNHZFKISI-LJPVGTDHSA-N

> <FORMULA>
C30H51N6O

> <MOLECULAR_WEIGHT>
511.779

> <EXACT_MASS>
511.412435286

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
88

> <JCHEM_AVERAGE_POLARIZABILITY>
64.66306596118429

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E,6E,10E)-N-{2-[1-(3-carbamimidamidopropyl)-3-methyl-2,3-dihydro-1H-imidazol-4-yl]ethyl}-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenimidic acid

> <JCHEM_LOGP>
3.397256316780995

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.176317228134775

> <JCHEM_PKA_STRONGEST_BASIC>
12.175503553737569

> <JCHEM_POLAR_SURFACE_AREA>
100.97

> <JCHEM_REFRACTIVITY>
173.81589999999994

> <JCHEM_ROTATABLE_BOND_COUNT>
17

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2E,6E,10E)-N-{2-[1-(3-carbamimidamidopropyl)-3-methyl-2H-imidazol-4-yl]ethyl}-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0     -26.804  -3.290   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -25.899  -2.045   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -26.525  -0.638   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -24.367  -2.206   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -23.462  -0.960   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -21.931  -1.121   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -21.025   0.125   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -21.652   1.532   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -19.494  -0.036   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -18.589   1.210   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -17.057   1.049   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -16.152   2.295   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -16.778   3.702   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0     -14.620   2.134   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0     -13.715   3.380   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0     -12.184   3.219   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0     -11.278   4.465   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0     -11.905   5.872   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -9.747   4.304   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -8.842   5.550   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -9.468   6.957   0.000  0.00  0.00           O+0
HETATM   22  N   UNK     0      -7.310   5.389   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0      -6.405   6.635   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -4.873   6.474   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -4.247   5.067   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -2.741   4.747   0.000  0.00  0.00           C+0
HETATM   27  N   UNK     0      -2.580   3.215   0.000  0.00  0.00           N+0
HETATM   28  C   UNK     0      -1.246   2.445   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.088   3.215   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       1.421   2.445   0.000  0.00  0.00           C+0
HETATM   31  N   UNK     0       2.755   3.215   0.000  0.00  0.00           N+0
HETATM   32  C   UNK     0       4.089   2.445   0.000  0.00  0.00           C+0
HETATM   33  N   UNK     0       5.423   3.215   0.000  0.00  0.00           N+0
HETATM   34  N   UNK     0       4.089   0.905   0.000  0.00  0.00           N+0
HETATM   35  C   UNK     0      -3.986   2.589   0.000  0.00  0.00           C+0
HETATM   36  N   UNK     0      -5.017   3.733   0.000  0.00  0.00           N+0
HETATM   37  C   UNK     0      -6.548   3.572   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   36                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   35                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32                                                            
CONECT   35   27   36                                                       
CONECT   36   35   25   37                                                  
CONECT   37   36                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₅₁N₆O

Average Mass

511.7790 Da

Monoisotopic Mass

511.41244 Da

IUPAC Name

(2E,6E,10E)-N-{2-[1-(3-carbamimidamidopropyl)-3-methyl-2,3-dihydro-1H-imidazol-4-yl]ethyl}-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenimidic acid

Traditional Name

(2E,6E,10E)-N-{2-[1-(3-carbamimidamidopropyl)-3-methyl-2H-imidazol-4-yl]ethyl}-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenimidic acid

CAS Registry Number

Not Available

SMILES

CN1[CH]N(CCCNC(N)=N)C=C1CCN=C(O)\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C

InChI Identifier

InChI=1S/C30H51N6O/c1-24(2)11-7-12-25(3)13-8-14-26(4)15-9-16-27(5)21-29(37)33-19-17-28-22-36(23-35(28)6)20-10-18-34-30(31)32/h11,13,15,21-23H,7-10,12,14,16-20H2,1-6H3,(H,33,37)(H4,31,32,34)/b25-13+,26-15+,27-21+

InChI Key

BLQNKTNHZFKISI-LJPVGTDHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.4	ChemAxon
pKa (Strongest Acidic)	5.18	ChemAxon
pKa (Strongest Basic)	12.18	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	100.97 Å²	ChemAxon
Rotatable Bond Count	17	ChemAxon
Refractivity	173.82 m³·mol⁻¹	ChemAxon
Polarizability	64.66 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl (NP0320922)

MOL for NP0320922 (1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl)

3D MOL for NP0320922 (1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl)

3D SDF for NP0320922 (1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl)

3D-SDF for NP0320922 (1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl)

PDB for NP0320922 (1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl)

3D PDB for NP0320922 (1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl)

SMILES for NP0320922 (1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl)

INCHI for NP0320922 (1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl)

Structure for NP0320922 (1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl)

3D Structure for NP0320922 (1-(3-carbamimidamidopropyl)-4-(2-{[(2e,6e,10e)-1-hydroxy-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ylidene]amino}ethyl)-3-methyl-2h-imidazol-2-yl)