Np mrd loader

Record Information
Version2.0
Created at2022-09-11 22:27:42 UTC
Updated at2022-09-11 22:27:42 UTC
NP-MRD IDNP0320674
Secondary Accession NumbersNone
Natural Product Identification
Common Name1-[(1r,4r,5s)-1,4-dimethyl-2,8-dioxabicyclo[3.2.1]octan-4-yl]-3-[(1s,2r,3r,7r,10s,14r)-14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl]propan-1-one
DescriptionSecodaphniphylline belongs to the class of organic compounds known as daphniphylline-type alkaloids. These are alkaloids (or derivatives thereof) from the genus Daphniphyllum, possessing 22 carbon polycyclic fused ring systems with or without the C8 side chain. The C8 unit consists of 6-oxabicyclo[3.2.1]Octane or 2,8-dioxabicyclo[3.2.1]Octane. 1-[(1r,4r,5s)-1,4-dimethyl-2,8-dioxabicyclo[3.2.1]octan-4-yl]-3-[(1s,2r,3r,7r,10s,14r)-14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl]propan-1-one is found in Daphniphyllum calycinum, Daphniphyllum macropodum and Daphniphyllum oldhamii. 1-[(1r,4r,5s)-1,4-dimethyl-2,8-dioxabicyclo[3.2.1]octan-4-yl]-3-[(1s,2r,3r,7r,10s,14r)-14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl]propan-1-one was first documented in 2004 (PMID: 17191794). Based on a literature review a small amount of articles have been published on Secodaphniphylline (PMID: 33074659) (PMID: 17311225) (PMID: 19554242) (PMID: 35423413).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC30H47NO3
Average Mass469.7100 Da
Monoisotopic Mass469.35559 Da
IUPAC NameNot Available
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
CC(C)[C@H]1CC[C@@]2(C)[C@@H]3CC[C@]45CCC[C@H]4[C@@]2(CCC(=O)[C@]2(C)CO[C@@]4(C)CC[C@@H]2O4)C1NC35
InChI Identifier
InChI=1S/C30H47NO3/c1-18(2)19-8-13-27(4)20-9-15-29-12-6-7-21(29)30(27,24(19)31-25(20)29)16-10-22(32)26(3)17-33-28(5)14-11-23(26)34-28/h18-21,23-25,31H,6-17H2,1-5H3/t19-,20-,21-,23+,24?,25?,26+,27+,28-,29-,30+/m1/s1
InChI KeyLYCPGVYCDLJBAA-GACJWEHQSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Daphniphyllum calycinumLOTUS Database
Daphniphyllum macropodumLOTUS Database
Daphniphyllum oldhamiiLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as daphniphylline-type alkaloids. These are alkaloids (or derivatives thereof) from the genus Daphniphyllum, possessing 22 carbon polycyclic fused ring systems with or without the C8 side chain. The C8 unit consists of 6-oxabicyclo[3.2.1]Octane or 2,8-dioxabicyclo[3.2.1]Octane.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassDaphniphylline-type alkaloids
Sub ClassNot Available
Direct ParentDaphniphylline-type alkaloids
Alternative Parents
Substituents
  • Daphniphylline-type alkaloid
  • Sesquiterpenoid
  • Quinolidine
  • Oxepane
  • Ketal
  • Meta-dioxane
  • Piperidine
  • Oxolane
  • Ketone
  • Acetal
  • Secondary aliphatic amine
  • Secondary amine
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Aldehyde
  • Amine
  • Carbonyl group
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00040267
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound102060135
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Guo LD, Chen Y, Xu J: Total Synthesis of Daphniphyllum Alkaloids: From Bicycles to Diversified Caged Structures. Acc Chem Res. 2020 Nov 17;53(11):2726-2737. doi: 10.1021/acs.accounts.0c00532. Epub 2020 Oct 14. [PubMed:33074659 ]
  2. Mu SZ, Yang XW, Di YT, He HP, Wang Y, Wang YH, Li L, Hao XJ: Secophnane-type alkaloids from Daphniphyllum oldhami. Chem Biodivers. 2007 Feb;4(2):129-38. doi: 10.1002/cbdv.200790017. [PubMed:17311225 ]
  3. Chen X, Zhan ZJ, Yue JM: Oldhamiphylline A: a novel hexacyclic alkaloid from Daphniphyllum oldhami. Chem Biodivers. 2004 Oct;1(10):1513-8. doi: 10.1002/cbdv.200490111. [PubMed:17191794 ]
  4. Kobayashi J, Kubota T: The Daphniphyllum alkaloids. Nat Prod Rep. 2009 Jul;26(7):936-62. doi: 10.1039/b813006j. Epub 2009 May 8. [PubMed:19554242 ]
  5. Yang J, Liu X, Fu J, Lyu HY, Bai LP, Jiang ZH, Zhu GY: Calycindaphines A-J, Daphniphyllum alkaloids from the roots of Daphniphyllum calycinum. RSC Adv. 2021 Mar 1;11(16):9057-9066. doi: 10.1039/d1ra00107h. eCollection 2021 Mar 1. [PubMed:35423413 ]
  6. LOTUS database [Link]