NP-MRD: Showing NP-Card for 3-[(3h-purin-6-ylamino)methyl]phenol (NP0320409)

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Record Information

Version

2.0

Created at

2022-09-11 22:02:37 UTC

Updated at

2022-09-11 22:02:37 UTC

NP-MRD ID

NP0320409

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-[(3h-purin-6-ylamino)methyl]phenol

Description

Meta-topolin belongs to the class of organic compounds known as 6-alkylaminopurines. 6-Alkylaminopurines are compounds that contain an alkylamine group attached at the 6-position of a purine. Purine is a bicyclic aromatic compound made up of a pyrimidine ring fused to an imidazole ring. 3-[(3h-purin-6-ylamino)methyl]phenol is found in Populus canadensis. Meta-topolin is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 29 31  0  0  0  0  0  0  0  0999 V2000
   -4.6789    1.1850   -1.7008 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9644    0.6529   -0.6525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3905    0.6987    0.6597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6670    0.1633    1.6965 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4701   -0.4428    1.4165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0157   -0.5047    0.1093 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7176   -1.1658   -0.1673 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3846   -0.2231   -0.1013 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7316   -0.6160   -0.3297 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0568   -1.8841   -0.6196 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3522   -2.2247   -0.8319 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3557   -1.3315   -0.7648 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0767   -0.0386   -0.4751 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8515    1.0529   -0.3429 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0111    2.0607   -0.0477 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7426    1.6169    0.0046 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.7607    0.2995   -0.2610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7605    0.0419   -0.9252 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6005    2.1195   -2.0469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3208    1.1690    0.8830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0009    0.1975    2.7371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8824   -0.8744    2.2350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7722   -1.6421   -1.1798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6023   -1.9863    0.5760 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1633    0.7601    0.1200 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5304   -3.2694   -1.0607 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9014    1.1282   -0.4446 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2771    3.0958    0.1298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3518   -0.0384   -1.9243 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 17  2  0
 17 16  1  0
 16 15  2  0
 15 14  1  0
 14 13  1  0
 13 12  2  0
 12 11  1  0
 11 10  2  0
  6 18  2  0
 18  2  1  0
 10  9  1  0
 13 17  1  0
  1 19  1  0
  3 20  1  0
  4 21  1  0
  5 22  1  0
  7 23  1  0
  7 24  1  0
  8 25  1  0
 15 28  1  0
 14 27  1  0
 11 26  1  0
 18 29  1  0
M  END


  Mrv1533004271515262D          

 18 20  0  0  0  0            999 V2000
    1.1355    4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8500    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7798   -0.2549    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2949    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7798    1.0799    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8500    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
  9 17  2  0  0  0  0
 13 17  1  0  0  0  0
  6 18  2  0  0  0  0
  2 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0320409

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=CC=CC(CNC2=C3N=CNC3=NC=N2)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C12H11N5O/c18-9-3-1-2-8(4-9)5-13-11-10-12(15-6-14-10)17-7-16-11/h1-4,6-7,18H,5H2,(H2,13,14,15,16,17)

> <INCHI_KEY>
BUDWTFCZGZYQHZ-UHFFFAOYSA-N

> <FORMULA>
C12H11N5O

> <MOLECULAR_WEIGHT>
241.254

> <EXACT_MASS>
241.096359994

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
29

> <JCHEM_AVERAGE_POLARIZABILITY>
24.553349604624017

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-{[(9H-purin-6-yl)amino]methyl}phenol

> <ALOGPS_LOGP>
1.34

> <JCHEM_LOGP>
1.1915991469999998

> <ALOGPS_LOGS>
-3.36

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.998999296725376

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.284278381205311

> <JCHEM_PKA_STRONGEST_BASIC>
5.055045792597193

> <JCHEM_POLAR_SURFACE_AREA>
86.72

> <JCHEM_REFRACTIVITY>
68.6862

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.05e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
adenine,6N-M-hydroxybenzyl

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-APR-15         0                                  
HETATM    1  O   UNK     0       2.120   9.240   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       3.453   8.470   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.787   9.240   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.121   8.470   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.121   6.930   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.787   6.160   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.787   4.620   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       6.121   3.850   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       6.121   2.310   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0       7.454   1.540   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0       7.454   0.000   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       6.121  -0.770   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       4.787   0.000   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0       3.322  -0.476   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0       2.417   0.770   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0       3.322   2.016   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0       4.787   1.540   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.453   6.930   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   18                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   18                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   17                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   17                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16    9   13                                                  
CONECT   18    6    2                                                       
MASTER        0    0    0    0    0    0    0    0   18    0   40    0
END

View in JSmol

Synonyms

Value	Source
6-(3-hydroxybenzylamino)Purine	ChEMBL

Chemical Formula

C₁₂H₁₁N₅O

Average Mass

241.2540 Da

Monoisotopic Mass

241.09636 Da

IUPAC Name

3-{[(9H-purin-6-yl)amino]methyl}phenol

Traditional Name

adenine,6N-M-hydroxybenzyl

CAS Registry Number

Not Available

SMILES

OC1=CC=CC(CNC2=C3N=CNC3=NC=N2)=C1

InChI Identifier

InChI=1S/C12H11N5O/c18-9-3-1-2-8(4-9)5-13-11-10-12(15-6-14-10)17-7-16-11/h1-4,6-7,18H,5H2,(H2,13,14,15,16,17)

InChI Key

BUDWTFCZGZYQHZ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Populus canadensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 6-alkylaminopurines. 6-Alkylaminopurines are compounds that contain an alkylamine group attached at the 6-position of a purine. Purine is a bicyclic aromatic compound made up of a pyrimidine ring fused to an imidazole ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Imidazopyrimidines

Sub Class

Purines and purine derivatives

Direct Parent

6-alkylaminopurines

Alternative Parents

Substituents

6-alkylaminopurine
Benzylamine
Aminopyrimidine
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Monocyclic benzene moiety
Pyrimidine
Benzenoid
Imidolactam
Imidazole
Heteroaromatic compound
Azole
Azacycle
Organic nitrogen compound
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.34	ALOGPS
logP	1.19	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	9.28	ChemAxon
pKa (Strongest Basic)	5.06	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	86.72 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	68.69 m³·mol⁻¹	ChemAxon
Polarizability	24.55 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11557770

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-[(3h-purin-6-ylamino)methyl]phenol (NP0320409)

MOL for NP0320409 (3-[(3h-purin-6-ylamino)methyl]phenol)

3D MOL for NP0320409 (3-[(3h-purin-6-ylamino)methyl]phenol)

3D SDF for NP0320409 (3-[(3h-purin-6-ylamino)methyl]phenol)

3D-SDF for NP0320409 (3-[(3h-purin-6-ylamino)methyl]phenol)

PDB for NP0320409 (3-[(3h-purin-6-ylamino)methyl]phenol)

3D PDB for NP0320409 (3-[(3h-purin-6-ylamino)methyl]phenol)

SMILES for NP0320409 (3-[(3h-purin-6-ylamino)methyl]phenol)

INCHI for NP0320409 (3-[(3h-purin-6-ylamino)methyl]phenol)

Structure for NP0320409 (3-[(3h-purin-6-ylamino)methyl]phenol)

3D Structure for NP0320409 (3-[(3h-purin-6-ylamino)methyl]phenol)