Record Information |
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Version | 1.0 |
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Created at | 2022-09-11 21:59:46 UTC |
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Updated at | 2022-09-11 21:59:47 UTC |
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NP-MRD ID | NP0320381 |
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Secondary Accession Numbers | None |
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Natural Product Identification |
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Common Name | {[(4e,6z,8s,9s,10e,12s,13r,14s,16r)-3,13,20-trihydroxy-22-[(2-hydroxyacetyl)oxy]-8,14,19-trimethoxy-4,10,12,16-tetramethyl-2-azabicyclo[16.3.1]docosa-1(21),2,4,6,10,18(22),19-heptaen-9-yl]oxy}methanimidic acid |
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Description | Geldanamycin E belongs to the class of organic compounds known as anisoles. These are organic compounds containing a methoxybenzene or a derivative thereof. It was first documented in 2002 (PMID: 31593387). Based on a literature review a significant number of articles have been published on Geldanamycin E (PMID: 27253005) (PMID: 27583328) (PMID: 36127157) (PMID: 36127156) (PMID: 32273216) (PMID: 35884999). |
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Structure | CO[C@H]1C[C@H](C)CC2=C(OC(=O)CO)C(=CC(O)=C2OC)N=C(O)\C(C)=C\C=C/[C@H](OC)[C@@H](OC(O)=N)\C(C)=C\[C@H](C)[C@H]1O InChI=1S/C31H44N2O11/c1-16-11-20-28(43-25(36)15-34)21(14-22(35)29(20)42-7)33-30(38)17(2)9-8-10-23(40-5)27(44-31(32)39)19(4)13-18(3)26(37)24(12-16)41-6/h8-10,13-14,16,18,23-24,26-27,34-35,37H,11-12,15H2,1-7H3,(H2,32,39)(H,33,38)/b10-8-,17-9+,19-13+/t16-,18+,23+,24+,26-,27+/m1/s1 |
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Synonyms | Not Available |
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Chemical Formula | C31H44N2O11 |
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Average Mass | 620.6960 Da |
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Monoisotopic Mass | 620.29451 Da |
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IUPAC Name | {[(4E,6Z,8S,9S,10E,12S,13R,14S,16R)-3,13,20-trihydroxy-22-[(2-hydroxyacetyl)oxy]-8,14,19-trimethoxy-4,10,12,16-tetramethyl-2-azabicyclo[16.3.1]docosa-1(21),2,4,6,10,18(22),19-heptaen-9-yl]oxy}methanimidic acid |
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Traditional Name | {[(4E,6Z,8S,9S,10E,12S,13R,14S,16R)-3,13,20-trihydroxy-22-[(2-hydroxyacetyl)oxy]-8,14,19-trimethoxy-4,10,12,16-tetramethyl-2-azabicyclo[16.3.1]docosa-1(21),2,4,6,10,18(22),19-heptaen-9-yl]oxy}methanimidic acid |
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CAS Registry Number | Not Available |
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SMILES | CO[C@H]1C[C@H](C)CC2=C(OC(=O)CO)C(=CC(O)=C2OC)N=C(O)\C(C)=C\C=C/[C@H](OC)[C@@H](OC(O)=N)\C(C)=C\[C@H](C)[C@H]1O |
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InChI Identifier | InChI=1S/C31H44N2O11/c1-16-11-20-28(43-25(36)15-34)21(14-22(35)29(20)42-7)33-30(38)17(2)9-8-10-23(40-5)27(44-31(32)39)19(4)13-18(3)26(37)24(12-16)41-6/h8-10,13-14,16,18,23-24,26-27,34-35,37H,11-12,15H2,1-7H3,(H2,32,39)(H,33,38)/b10-8-,17-9+,19-13+/t16-,18+,23+,24+,26-,27+/m1/s1 |
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InChI Key | XGKOWRWJWKRQHX-PAZISRHASA-N |
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Experimental Spectra |
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| Not Available | Predicted Spectra |
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| Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 13C NMR Spectrum (1D, 25 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| Chemical Shift Submissions |
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| Not Available | Species |
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Species of Origin | Not Available |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as anisoles. These are organic compounds containing a methoxybenzene or a derivative thereof. |
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Kingdom | Organic compounds |
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Super Class | Benzenoids |
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Class | Phenol ethers |
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Sub Class | Anisoles |
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Direct Parent | Anisoles |
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Alternative Parents | |
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Substituents | - Anisole
- 1-hydroxy-2-unsubstituted benzenoid
- Alkyl aryl ether
- Cyclic carboximidic acid
- Secondary alcohol
- Carboxylic acid ester
- Azacycle
- Organoheterocyclic compound
- Organic 1,3-dipolar compound
- Propargyl-type 1,3-dipolar organic compound
- Polyol
- Monocarboxylic acid or derivatives
- Ether
- Dialkyl ether
- Carboxylic acid derivative
- Carboximidic acid derivative
- Organic nitrogen compound
- Organic oxygen compound
- Organopnictogen compound
- Organic oxide
- Hydrocarbon derivative
- Primary alcohol
- Organooxygen compound
- Organonitrogen compound
- Imine
- Carbonyl group
- Alcohol
- Aromatic heteropolycyclic compound
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Molecular Framework | Aromatic heteropolycyclic compounds |
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External Descriptors | Not Available |
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Physical Properties |
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State | Not Available |
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Experimental Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Predicted Properties | |
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General References | - Authors unspecified: Childhood Vascular Tumors Treatment (PDQ(R)): Patient Version. 2002. [PubMed:27253005 ]
- Authors unspecified: Childhood Esophageal Cancer Treatment (PDQ(R)): Health Professional Version. 2002. [PubMed:31593387 ]
- Authors unspecified: Financial Toxicity and Cancer Treatment (PDQ(R)): Health Professional Version. 2002. [PubMed:27583328 ]
- Gadot R, Najera R, Hirani S, Anand A, Storch E, Goodman WK, Shofty B, Sheth SA: Efficacy of deep brain stimulation for treatment-resistant obsessive-compulsive disorder: systematic review and meta-analysis. J Neurol Neurosurg Psychiatry. 2022 Sep 20. pii: jnnp-2021-328738. doi: 10.1136/jnnp-2021-328738. [PubMed:36127157 ]
- Koggel LM, Lantinga MA, Buchner FL, Drenth JPH, Frankema JS, Heeregrave EJ, Heringa M, Numans ME, Siersema PD: Predictors for inappropriate proton pump inhibitor use: observational study in primary care. Br J Gen Pract. 2022 Jun 24. pii: BJGP.2022.0178. doi: 10.3399/BJGP.2022.0178. [PubMed:36127156 ]
- Nong XH, Tu ZC, Qi SH: Ansamycin derivatives from the marine-derived Streptomyces sp. SCSGAA 0027 and their cytotoxic and antiviral activities. Bioorg Med Chem Lett. 2020 Jun 1;30(11):127168. doi: 10.1016/j.bmcl.2020.127168. Epub 2020 Apr 3. [PubMed:32273216 ]
- Shahini E, Pasculli G, Mastropietro A, Stolfi P, Tieri P, Vergni D, Cozzolongo R, Pesce F, Giannelli G: Network Proximity-Based Drug Repurposing Strategy for Early and Late Stages of Primary Biliary Cholangitis. Biomedicines. 2022 Jul 13;10(7):1694. doi: 10.3390/biomedicines10071694. [PubMed:35884999 ]
- Nahalka J: Transcription of the Envelope Protein by 1-L Protein-RNA Recognition Code Leads to Genes/Proteins That Are Relevant to the SARS-CoV-2 Life Cycle and Pathogenesis. Curr Issues Mol Biol. 2022 Feb 6;44(2):791-816. doi: 10.3390/cimb44020055. [PubMed:35723340 ]
- Sakai C, Hosokawa K, Watanabe T, Suzuki Y, Nakano T, Ueda K, Fujimuro M: Human hepatitis B virus-derived virus-like particle as a drug and DNA delivery carrier. Biochem Biophys Res Commun. 2021 Dec 3;581:103-109. doi: 10.1016/j.bbrc.2021.10.009. Epub 2021 Oct 7. [PubMed:34678685 ]
- Skrzypczak N, Pyta K, Ruszkowski P, Mikolajczak P, Kucinska M, Murias M, Gdaniec M, Bartl F, Przybylski P: Anticancer activity and toxicity of new quaternary ammonium geldanamycin derivative salts and their mixtures with potentiators. J Enzyme Inhib Med Chem. 2021 Dec;36(1):1898-1904. doi: 10.1080/14756366.2021.1960829. [PubMed:34344239 ]
- Xie Y, Guo L, Huang J, Huang X, Cong Z, Liu Q, Wang Q, Pang X, Xiang S, Zhou X, Liu Y, Wang J, Wang J: Cyclopentenone-Containing Tetrahydroquinoline and Geldanamycin Alkaloids from Streptomyces malaysiensis as Potential Anti-Androgens against Prostate Cancer Cells. J Nat Prod. 2021 Jul 23;84(7):2004-2011. doi: 10.1021/acs.jnatprod.1c00297. Epub 2021 Jul 6. [PubMed:34225450 ]
- Wen Z, Liu F, Liu G, Sun Q, Zhang Y, Muhammad M, Xu Y, Li H, Sun S: Assembly of multifunction dyes and heat shock protein 90 inhibitor coupled to bovine serum albumin in nanoparticles for multimodal photodynamic/photothermal/chemo-therapy. J Colloid Interface Sci. 2021 May 15;590:290-300. doi: 10.1016/j.jcis.2021.01.052. Epub 2021 Jan 27. [PubMed:33548612 ]
- Diaz-Diaz A, Roca-Lema D, Casas-Pais A, Romay G, Colombo G, Concha A, Grana B, Figueroa A: Heat Shock Protein 90 Chaperone Regulates the E3 Ubiquitin-Ligase Hakai Protein Stability. Cancers (Basel). 2020 Jan 15;12(1):215. doi: 10.3390/cancers12010215. [PubMed:31952268 ]
- Aruanno M, Bachmann D, Sanglard D, Lamoth F: Link between Heat Shock Protein 90 and the Mitochondrial Respiratory Chain in the Caspofungin Stress Response of Aspergillus fumigatus. Antimicrob Agents Chemother. 2019 Jun 24;63(7):e00208-19. doi: 10.1128/AAC.00208-19. Print 2019 Jul. [PubMed:31061164 ]
- Yamasaki Y, Kobayashi K, Inaba A, Uehara D, Tojima H, Kakizaki S, Chiba K: Indirect activation of pregnane X receptor in the induction of hepatic CYP3A11 by high-dose rifampicin in mice. Xenobiotica. 2018 Nov;48(11):1098-1105. doi: 10.1080/00498254.2017.1400128. Epub 2017 Nov 23. [PubMed:29095659 ]
- Jogula S, Soorneedi AR, Gaddam J, Chamakuri S, Deora GS, Indarapu RK, Ramgopal MK, Dravida S, Arya P: Geldanamycin-inspired compounds induce direct trans-differentiation of human mesenchymal stem cells to neurons. Eur J Med Chem. 2017 Jul 28;135:110-116. doi: 10.1016/j.ejmech.2017.03.082. Epub 2017 Apr 18. [PubMed:28441579 ]
- Castagnola P, Bellese G, Birocchi F, Gagliani MC, Tacchetti C, Cortese K: Identification of an HSP90 modulated multi-step process for ERBB2 degradation in breast cancer cells. Oncotarget. 2016 Dec 20;7(51):85411-85429. doi: 10.18632/oncotarget.13392. [PubMed:27863425 ]
- Puthiyakunnon S, He X, Boddu S, Huang SH, Cao H: C-Met Inhibitors are Potential Novel Therapeutic Agents Against Listeria monocytogenes Infection Through Blocking the Bacteria Entry into Nonphagocytic Cells. Curr Top Med Chem. 2017;17(3):278-289. doi: 10.2174/1568026616666160829162313. [PubMed:27572078 ]
- Xu Y, Wallace MA, Fitzgerald MC: Thermodynamic Analysis of the Geldanamycin-Hsp90 Interaction in a Whole Cell Lysate Using a Mass Spectrometry-Based Proteomics Approach. J Am Soc Mass Spectrom. 2016 Oct;27(10):1670-6. doi: 10.1007/s13361-016-1457-2. Epub 2016 Aug 16. [PubMed:27530778 ]
- Kaur H, Desai SD, Kumar V, Rathi P, Singh J: Heterocyclic Drug-polymer Conjugates for Cancer Targeted Drug Delivery. Anticancer Agents Med Chem. 2016;16(11):1355-1377. doi: 10.2174/1871520615666160504094044. [PubMed:27141881 ]
- Pallocca G, Grinberg M, Henry M, Frickey T, Hengstler JG, Waldmann T, Sachinidis A, Rahnenfuhrer J, Leist M: Identification of transcriptome signatures and biomarkers specific for potential developmental toxicants inhibiting human neural crest cell migration. Arch Toxicol. 2016 Jan;90(1):159-80. doi: 10.1007/s00204-015-1658-7. Epub 2015 Dec 26. [PubMed:26705709 ]
- Michela P, Velia V, Aldo P, Ada P: Role of connexin 43 in cardiovascular diseases. Eur J Pharmacol. 2015 Dec 5;768:71-6. doi: 10.1016/j.ejphar.2015.10.030. Epub 2015 Oct 20. [PubMed:26499977 ]
- Hombach A, Ommen G, Sattler V, Clos J: Leishmania donovani P23 protects parasites against HSP90 inhibitor-mediated growth arrest. Cell Stress Chaperones. 2015 Jul;20(4):673-85. doi: 10.1007/s12192-015-0595-y. Epub 2015 May 7. [PubMed:25948161 ]
- Wang J, Li Z, Lin Z, Zhao B, Wang Y, Peng R, Wang M, Lu C, Shi G, Shen Y: 17-DMCHAG, a new geldanamycin derivative, inhibits prostate cancer cells through Hsp90 inhibition and survivin downregulation. Cancer Lett. 2015 Jun 28;362(1):83-96. doi: 10.1016/j.canlet.2015.03.025. Epub 2015 Mar 23. [PubMed:25813406 ]
- Henrich CJ, Brooks AD, Erickson KL, Thomas CL, Bokesch HR, Tewary P, Thompson CR, Pompei RJ, Gustafson KR, McMahon JB, Sayers TJ: Withanolide E sensitizes renal carcinoma cells to TRAIL-induced apoptosis by increasing cFLIP degradation. Cell Death Dis. 2015 Feb 26;6(2):e1666. doi: 10.1038/cddis.2015.38. [PubMed:25719250 ]
- LOTUS database [Link]
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