NP-MRD: Showing NP-Card for [2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol (NP0319994)

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Record Information

Version

2.0

Created at

2022-09-11 21:19:09 UTC

Updated at

2022-09-11 21:19:09 UTC

NP-MRD ID

NP0319994

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol

Description

[2-(4,8-Dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. [2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol is found in Salvia divinorum. [2-(4,8-Dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004171516232D          

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M  END

     RDKit          3D

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M  END


  Mrv1533004171516232D          

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 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 10 29  1  0  0  0  0
  6 30  1  0  0  0  0
  2 31  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0319994

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCCC(C)=CCCC(C)=CC1C(CO)C1(C)CCC=C(C)CCC=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C30H50O/c1-23(2)13-9-15-25(5)17-11-18-27(7)21-28-29(22-31)30(28,8)20-12-19-26(6)16-10-14-24(3)4/h13-14,17,19,21,28-29,31H,9-12,15-16,18,20,22H2,1-8H3

> <INCHI_KEY>
XLTBFLSFXLLDAZ-UHFFFAOYSA-N

> <FORMULA>
C30H50O

> <MOLECULAR_WEIGHT>
426.729

> <EXACT_MASS>
426.38616623

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
81

> <JCHEM_AVERAGE_POLARIZABILITY>
56.517868358720705

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol

> <ALOGPS_LOGP>
7.46

> <JCHEM_LOGP>
8.545519562333332

> <ALOGPS_LOGS>
-5.73

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
17.849986093895186

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5522160825302453

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
143.58660000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.90e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0       9.217 -11.995   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.883 -11.225   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.883  -9.685   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.549  -8.915   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.549  -7.375   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.216  -6.605   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.216  -5.065   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.882  -4.295   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.882  -2.755   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.548  -1.985   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.548  -0.445   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.215   0.325   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.325   0.325   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.659  -0.445   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -2.993   0.325   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       0.445   1.659   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.439   2.921   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.328   2.921   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.862   2.786   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.745   4.048   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.279   3.914   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.930   2.518   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.163   5.175   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       7.697   5.041   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.580   6.302   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      10.114   6.168   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      10.998   7.430   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      10.765   4.773   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       1.215  -2.755   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.882  -7.375   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       6.549 -11.995   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   31                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   30                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   29                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   16                                                  
CONECT   13   12   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   13   12   17   18                                             
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26                                                            
CONECT   29   10                                                            
CONECT   30    6                                                            
CONECT   31    2                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₅₀O

Average Mass

426.7290 Da

Monoisotopic Mass

426.38617 Da

IUPAC Name

[2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol

Traditional Name

[2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol

CAS Registry Number

Not Available

SMILES

CC(C)=CCCC(C)=CCCC(C)=CC1C(CO)C1(C)CCC=C(C)CCC=C(C)C

InChI Identifier

InChI=1S/C30H50O/c1-23(2)13-9-15-25(5)17-11-18-27(7)21-28-29(22-31)30(28,8)20-12-19-26(6)16-10-14-24(3)4/h13-14,17,19,21,28-29,31H,9-12,15-16,18,20,22H2,1-8H3

InChI Key

XLTBFLSFXLLDAZ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Salvia divinorum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.46	ALOGPS
logP	8.55	ChemAxon
logS	-5.7	ALOGPS
pKa (Strongest Acidic)	17.85	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	143.59 m³·mol⁻¹	ChemAxon
Polarizability	56.52 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53463597

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol (NP0319994)

MOL for NP0319994 ([2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol)

3D MOL for NP0319994 ([2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol)

3D SDF for NP0319994 ([2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol)

3D-SDF for NP0319994 ([2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol)

PDB for NP0319994 ([2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol)

3D PDB for NP0319994 ([2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol)

SMILES for NP0319994 ([2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol)

INCHI for NP0319994 ([2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol)

Structure for NP0319994 ([2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol)

3D Structure for NP0319994 ([2-(4,8-dimethylnona-3,7-dien-1-yl)-2-methyl-3-(2,6,10-trimethylundeca-1,5,9-trien-1-yl)cyclopropyl]methanol)