NP-MRD: Showing NP-Card for 6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one (NP0319871)

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Record Information

Version

2.0

Created at

2022-09-11 21:07:45 UTC

Updated at

2022-09-11 21:07:45 UTC

NP-MRD ID

NP0319871

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one

Description

6,8,12-Trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-2,5-dihydro-1,10-dioxatetraphen-5-one belongs to the class of organic compounds known as 4-prenylated xanthones. These are organic compounds containing a C5-isoprenoid group linked to a xanthone moiety at the 4-position. Xanthone is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring that carries a ketone group. 6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one is found in Garcinia merguensis. 6,8,12-Trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-2,5-dihydro-1,10-dioxatetraphen-5-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004191514442D          

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M  END

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M  END


  Mrv1533004191514442D          

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    4.9395   -2.5204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6695   -1.7409    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7497   -2.6764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0197   -3.4559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8298   -3.6118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4796   -4.0796    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6695   -3.9236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1294   -4.5473    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3193   -4.3914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5893   -7.3537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1913   -7.3537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8918   -8.2891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  4  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  4  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 16 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 33 34  2  0  0  0  0
 27 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 13 36  1  0  0  0  0
 24 36  2  0  0  0  0
 10 37  1  0  0  0  0
  6 38  1  0  0  0  0
  2 39  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0319871

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCCC(C)=CCCC(C)=CCC1=C(O)C2=C(C=CC(C)(C)O2)C2=C1OC1=CC(O)=CC(O)=C1C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C33H38O6/c1-19(2)9-7-10-20(3)11-8-12-21(4)13-14-24-29(36)32-23(15-16-33(5,6)39-32)27-30(37)28-25(35)17-22(34)18-26(28)38-31(24)27/h9,11,13,15-18,34-36H,7-8,10,12,14H2,1-6H3

> <INCHI_KEY>
NRQUXOREHDELAQ-UHFFFAOYSA-N

> <FORMULA>
C33H38O6

> <MOLECULAR_WEIGHT>
530.661

> <EXACT_MASS>
530.266838944

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
77

> <JCHEM_AVERAGE_POLARIZABILITY>
60.615766266834385

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-2,5-dihydro-1,10-dioxatetraphen-5-one

> <ALOGPS_LOGP>
7.00

> <JCHEM_LOGP>
8.647563206666668

> <ALOGPS_LOGS>
-5.59

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
7.9070465983519025

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.302199597616049

> <JCHEM_PKA_STRONGEST_BASIC>
-3.7491652086976504

> <JCHEM_POLAR_SURFACE_AREA>
96.22000000000001

> <JCHEM_REFRACTIVITY>
159.0004

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.38e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 19-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-APR-15         0                                  
HETATM    1  C   UNK     0      -5.902 -18.092   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.894 -16.928   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.382 -17.219   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.373 -16.055   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.861 -16.346   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.147 -15.182   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.659 -15.473   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667 -14.309   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.180 -14.600   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.188 -13.436   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.684 -11.981   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.692 -10.817   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.188  -9.361   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.676  -9.070   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       2.667 -10.234   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       3.171  -7.615   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.659  -7.324   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       1.155  -5.869   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.190  -6.618   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.184  -4.674   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.163  -4.705   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.676  -4.996   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.180  -6.451   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.692  -6.742   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.700  -5.578   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       6.196  -4.123   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       8.212  -5.869   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       9.220  -4.705   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       8.716  -3.250   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      10.733  -4.996   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      11.237  -6.451   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      12.749  -6.742   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      10.229  -7.615   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       8.716  -7.324   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       7.708  -8.488   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       6.196  -8.197   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       6.700 -13.727   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -0.357 -13.727   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -5.398 -15.473   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   39                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   38                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   37                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   36                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   23                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20   21                                             
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   18   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   16   24                                                  
CONECT   24   23   25   36                                                  
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   34                                                  
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34                                                       
CONECT   34   33   27   35                                                  
CONECT   35   34   36                                                       
CONECT   36   35   13   24                                                  
CONECT   37   10                                                            
CONECT   38    6                                                            
CONECT   39    2                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   84    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₃H₃₈O₆

Average Mass

530.6610 Da

Monoisotopic Mass

530.26684 Da

IUPAC Name

6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-2,5-dihydro-1,10-dioxatetraphen-5-one

Traditional Name

6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one

CAS Registry Number

Not Available

SMILES

CC(C)=CCCC(C)=CCCC(C)=CCC1=C(O)C2=C(C=CC(C)(C)O2)C2=C1OC1=CC(O)=CC(O)=C1C2=O

InChI Identifier

InChI=1S/C33H38O6/c1-19(2)9-7-10-20(3)11-8-12-21(4)13-14-24-29(36)32-23(15-16-33(5,6)39-32)27-30(37)28-25(35)17-22(34)18-26(28)38-31(24)27/h9,11,13,15-18,34-36H,7-8,10,12,14H2,1-6H3

InChI Key

NRQUXOREHDELAQ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Garcinia merguensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 4-prenylated xanthones. These are organic compounds containing a C5-isoprenoid group linked to a xanthone moiety at the 4-position. Xanthone is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring that carries a ketone group.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

4-prenylated xanthones

Alternative Parents

Substituents

4-prenylated xanthone
Pyranoxanthone
Sesquiterpenoid
Farsesane sesquiterpenoid
2,2-dimethyl-1-benzopyran
Chromone
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Pyranone
Pyran
Benzenoid
Heteroaromatic compound
Vinylogous acid
Polyol
Ether
Oxacycle
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7	ALOGPS
logP	8.65	ChemAxon
logS	-5.6	ALOGPS
pKa (Strongest Acidic)	7.3	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	96.22 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	159 m³·mol⁻¹	ChemAxon
Polarizability	60.62 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one (NP0319871)

MOL for NP0319871 (6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one)

3D MOL for NP0319871 (6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one)

3D SDF for NP0319871 (6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one)

3D-SDF for NP0319871 (6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one)

PDB for NP0319871 (6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one)

3D PDB for NP0319871 (6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one)

SMILES for NP0319871 (6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one)

INCHI for NP0319871 (6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one)

Structure for NP0319871 (6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one)

3D Structure for NP0319871 (6,8,12-trihydroxy-2,2-dimethyl-11-(3,7,11-trimethyldodeca-2,6,10-trien-1-yl)-1,10-dioxatetraphen-5-one)