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Record Information
Version2.0
Created at2022-09-11 21:03:36 UTC
Updated at2022-09-11 21:03:36 UTC
NP-MRD IDNP0319823
Secondary Accession NumbersNone
Natural Product Identification
Common Name2-[(3e)-4,8-dimethylnona-3,7-dien-1-yl]-6,11-dihydroxy-2-methyl-1,5-dioxatetraphen-10-one
DescriptionNIGROLINEAXANTHONE S belongs to the class of organic compounds known as pyranoxanthones. These are organic aromatic compounds containing a pyran or a hydrogenated derivative fused to a xanthone ring system. 2-[(3e)-4,8-dimethylnona-3,7-dien-1-yl]-6,11-dihydroxy-2-methyl-1,5-dioxatetraphen-10-one is found in Garcinia nigrolineata. It was first documented in 2002 (PMID: 31593387). Based on a literature review a significant number of articles have been published on NIGROLINEAXANTHONE S (PMID: 27253005) (PMID: 27583328) (PMID: 36127157) (PMID: 14695790).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC28H30O5
Average Mass446.5430 Da
Monoisotopic Mass446.20932 Da
IUPAC Name2-[(3E)-4,8-dimethylnona-3,7-dien-1-yl]-6,11-dihydroxy-2-methyl-2,10-dihydro-1,5-dioxatetraphen-10-one
Traditional Name2-[(3E)-4,8-dimethylnona-3,7-dien-1-yl]-6,11-dihydroxy-2-methyl-1,5-dioxatetraphen-10-one
CAS Registry NumberNot Available
SMILES
CC(C)=CCC\C(C)=C\CCC1(C)OC2=CC(O)=C3C(=O)C4=CC=CC(O)=C4OC3=C2C=C1
InChI Identifier
InChI=1S/C28H30O5/c1-17(2)8-5-9-18(3)10-7-14-28(4)15-13-19-23(33-28)16-22(30)24-25(31)20-11-6-12-21(29)26(20)32-27(19)24/h6,8,10-13,15-16,29-30H,5,7,9,14H2,1-4H3/b18-10+
InChI KeyRBHZFZSVMMGEQW-VCHYOVAHSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Garcinia nigrolineataLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyranoxanthones. These are organic aromatic compounds containing a pyran or a hydrogenated derivative fused to a xanthone ring system.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzopyrans
Sub Class1-benzopyrans
Direct ParentPyranoxanthones
Alternative Parents
Substituents
  • Pyranoxanthone
  • Pyranochromene
  • Chromone
  • Aromatic monoterpenoid
  • Monoterpenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Pyranone
  • 1-hydroxy-4-unsubstituted benzenoid
  • Alkyl aryl ether
  • Benzenoid
  • Pyran
  • Heteroaromatic compound
  • Vinylogous acid
  • Oxacycle
  • Ether
  • Organic oxygen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP7.3ChemAxon
pKa (Strongest Acidic)7.79ChemAxon
pKa (Strongest Basic)-3.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area75.99 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity132.7 m³·mol⁻¹ChemAxon
Polarizability50.88 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00044967
Chemspider ID9457255
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11282258
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Authors unspecified: Childhood Vascular Tumors Treatment (PDQ(R)): Patient Version. 2002. [PubMed:27253005 ]
  2. Authors unspecified: Childhood Esophageal Cancer Treatment (PDQ(R)): Health Professional Version. 2002. [PubMed:31593387 ]
  3. Authors unspecified: Financial Toxicity and Cancer Treatment (PDQ(R)): Health Professional Version. 2002. [PubMed:27583328 ]
  4. Gadot R, Najera R, Hirani S, Anand A, Storch E, Goodman WK, Shofty B, Sheth SA: Efficacy of deep brain stimulation for treatment-resistant obsessive-compulsive disorder: systematic review and meta-analysis. J Neurol Neurosurg Psychiatry. 2022 Sep 20. pii: jnnp-2021-328738. doi: 10.1136/jnnp-2021-328738. [PubMed:36127157 ]
  5. Rukachaisirikul V, Kamkaew M, Sukavisit D, Phongpaichit S, Sawangchote P, Taylor WC: Antibacterial xanthones from the leaves of Garcinia nigrolineata. J Nat Prod. 2003 Dec;66(12):1531-5. doi: 10.1021/np0303254. [PubMed:14695790 ]
  6. LOTUS database [Link]